View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14745_high_18 (Length: 227)
Name: NF14745_high_18
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 46708995 - 46708789
Alignment:
| Q |
1 |
ctaccttggacaaagagacagtatgcattggacatgtgatgcagaaccactggaagcatttgacaggtttggaaagaaactgaaagaaattgaagaaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46708995 |
ctaccttggacaaagagacagtatgcattggacatgtgatgcagagccactggaagcatttgacaggtttggaaagaaactgaaagaaattgaagaaaga |
46708896 |
T |
|
| Q |
101 |
attgtagctatgaatgatgatgtgagtctcaaaaatcgagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46708895 |
attgtagctatgaatgatgatgtgaatctcaaaaatcgagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactg |
46708796 |
T |
|
| Q |
201 |
gtgcagg |
207 |
Q |
| |
|
||||||| |
|
|
| T |
46708795 |
gtgcagg |
46708789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 46707942 - 46707852
Alignment:
| Q |
117 |
atgatgtgagtctcaaaaatcgagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactggtgcagg |
207 |
Q |
| |
|
||||||| || |||||||||||||||||| | |||||||||| ||| |||||||||||||| |||||||||| ||| |||||||| ||||| |
|
|
| T |
46707942 |
atgatgttagactcaaaaatcgagttggaacggttaaaatgcaataaactttgctttatccaagaagtgaaggtggactaactggcgcagg |
46707852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46708030 - 46707941
Alignment:
| Q |
1 |
ctaccttggacaaagagacagtatgcattggacatgtgatgcagaaccactggaagcatttgacaggtttggaaagaaactgaaagaaat |
90 |
Q |
| |
|
|||||||||| ||||||||| || ||||||| || ||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46708030 |
ctaccttggagaaagagacactaaacattggatatatgatgcagagccattggaagcatttgacaaatttggaaagaaactgaaagaaat |
46707941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University