View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14745_high_5 (Length: 465)
Name: NF14745_high_5
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_high_5 |
 | |
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| [»] scaffold1453 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 22361285 - 22361131
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22361285 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctat |
22361186 |
T |
|
| Q |
393 |
gcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361185 |
gcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
22361131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 22365672 - 22365518
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22365672 |
ggacaataacaatgtttactatactgcaaatttgatacatatcatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctat |
22365573 |
T |
|
| Q |
393 |
gcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22365572 |
gcttagttgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
22365518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 46790584 - 46790756
Alignment:
| Q |
37 |
caacacggagaagatacgtccttacccgctctactacaagctagcatgtttctccaaaacaaacgacaatccaacttaagaggtaagagctaaacatcaa |
136 |
Q |
| |
|
||||||| |||||||| |||||| || | |||||| |||| | |||||||| |||| ||| || |||||||||| |||||| ||||||||||||||| |
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| T |
46790584 |
caacacgtagaagatatgtccttccctgttctactcttagcttgaatgtttctgaaaaagaaaagaaaatccaactttagaggttagagctaaacatcaa |
46790683 |
T |
|
| Q |
137 |
atcaatattatacaaaaatattgtttgaaacatgagatatatttcttcagaagttaattgttaacggttattt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
46790684 |
atcaatattatacaaaaatattgtttgaaacatgagatatatttcttcaggagttaattgttaacggttattt |
46790756 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 331 - 447
Target Start/End: Original strand, 23397192 - 23397308
Alignment:
| Q |
331 |
ataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaactt |
430 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| || |||||||| ||||||||| | | ||| ||| | |||||||||| |||||||||||| ||||||| |
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|
| T |
23397192 |
ataccatccatacatctttcttacatatttagagtcaaatacttagtaatgacataacttatactttgttgatgtcatacgacataaacctatttaactt |
23397291 |
T |
|
| Q |
431 |
gtgcagataaccttact |
447 |
Q |
| |
|
|| |||| |||||||| |
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|
| T |
23397292 |
gtacagaacaccttact |
23397308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 293 - 447
Target Start/End: Original strand, 200615 - 200769
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
200615 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctat |
200714 |
T |
|
| Q |
393 |
gcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
200715 |
gcttagctgatgtcatatgaggtaaacctacttaacttgtgcagataaccttact |
200769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 294 - 447
Target Start/End: Original strand, 196237 - 196390
Alignment:
| Q |
294 |
gacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
196237 |
gacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatg |
196336 |
T |
|
| Q |
394 |
cttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
196337 |
cttagctgatgtcatatgacgtaaacctacttaactcgtgcagataaccttact |
196390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 30045391 - 30045233
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30045391 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
30045292 |
T |
|
| Q |
393 |
gcttagctgatgtc----atatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30045291 |
gcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttact |
30045233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 30049794 - 30049636
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049794 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
30049695 |
T |
|
| Q |
393 |
gcttagctgatgtc----atatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30049694 |
gcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttact |
30049636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 293 - 445
Target Start/End: Complemental strand, 7162746 - 7162594
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7162746 |
ggacaataacaatgtttactatgctgcaaatttaatacaaaccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctat |
7162647 |
T |
|
| Q |
393 |
gcttagctgatgtcatatgacataaacctacttaacttgtgcagataacctta |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7162646 |
gcttagctgatgtcatatgacataaacctgcttaacttgtgcagataacctta |
7162594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 3941649 - 3941491
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941649 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
3941550 |
T |
|
| Q |
393 |
gcttagctgatgtc----atatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3941549 |
gcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttact |
3941491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 3946048 - 3945890
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3946048 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
3945949 |
T |
|
| Q |
393 |
gcttagctgatgtc----atatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3945948 |
gcttagctgatgtcatatatatgacataaacctacttaacttgtgcagataatcttact |
3945890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 293 - 447
Target Start/End: Complemental strand, 1330835 - 1330681
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||| ||||| |
|
|
| T |
1330835 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccttacatccttcttacatacttatagtcaaatacttactaatgactcaacctat |
1330736 |
T |
|
| Q |
393 |
gcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1330735 |
actttgctgatgtcatatgacataaacctacttaacttgtgcagataacattact |
1330681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 293 - 447
Target Start/End: Original strand, 39949388 - 39949540
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
39949388 |
ggacaataacaatgtttactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagcctat |
39949487 |
T |
|
| Q |
393 |
gcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39949488 |
gtttagctgatgtcatatgacataaacctacttaact--tgcagataaccttact |
39949540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 293 - 447
Target Start/End: Original strand, 39953780 - 39953932
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctat |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| |
|
|
| T |
39953780 |
ggacaataacaatgtttactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagtctat |
39953879 |
T |
|
| Q |
393 |
gcttagctgatgtcatatgacataaacctacttaacttgtgcagataaccttact |
447 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39953880 |
gtttagctgatgtcatatgacataaacctacttaact--tgcagataaccttact |
39953932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1453 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold1453
Description:
Target: scaffold1453; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 293 - 388
Target Start/End: Complemental strand, 96 - 1
Alignment:
| Q |
293 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagc |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
96 |
ggacaataacaatgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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