View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14745_low_14 (Length: 279)
Name: NF14745_low_14
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 124 - 263
Target Start/End: Original strand, 31069196 - 31069335
Alignment:
| Q |
124 |
cactagatctcaatatcgaccaaacaataataaaaaacacaacaatcacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccga |
223 |
Q |
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| T |
31069196 |
cactagatctcaatatcgaccaaacaataataaaaaacacaacaaacacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccga |
31069295 |
T |
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| Q |
224 |
agacaaaatgaaagaaattgcttcagttcttccaaaaatg |
263 |
Q |
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| T |
31069296 |
agacaaaatgaaagaaattgcttcagttcttccaaaaatg |
31069335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31069073 - 31069137
Alignment:
| Q |
1 |
caccatttacccaaatctcaccccttttcattaaaaatccttttcaacccatttgttataatttc |
65 |
Q |
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| T |
31069073 |
caccatttacccaaatctcaccccttttcattaaaaacccttttcaacccatttgttataatttc |
31069137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 11593109 - 11593021
Alignment:
| Q |
171 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaa |
259 |
Q |
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| T |
11593109 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaa |
11593021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 11645010 - 11645098
Alignment:
| Q |
171 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaa |
259 |
Q |
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| T |
11645010 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaa |
11645098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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