View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14745_low_15 (Length: 265)
Name: NF14745_low_15
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 33731070 - 33731316
Alignment:
| Q |
1 |
atcattgtcatgcataaacacactgattattcttgctgccaaaatgctgcttaggttgatgcattccttttcaatgaggaagagaagccgtacaggaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33731070 |
atcattgtcatgcataaacacactgattattcttgctgccaaaatgctgcttaggttgatgcgttccttttcaatgaggaagagaagtcgtacaggaaga |
33731169 |
T |
|
| Q |
101 |
taatatgggaaaatcagaaccgcgagtatcttgaggtacagacaattttatttaatatttgttgttttaatagggccagataaagtagtctgttagttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33731170 |
taatatgggaaaatcagaaccgcgagtatcttgaggtacagacaattttatttaatatttgttgttttaatagggccagataaagtagtctgttagttat |
33731269 |
T |
|
| Q |
201 |
tccactttctctcataattgttacttgttagtatttcgttggagttc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33731270 |
tccactttctctcataattgttacttgttagtatttcgttggagttc |
33731316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 152
Target Start/End: Original strand, 33742513 - 33742662
Alignment:
| Q |
2 |
tcattgtcatgcataaacacactgattattcttgctgccaaaatgctgcttaggttgatgcattccttttcaatgaggaagagaagccgtacaggaagat |
101 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||| |||| |||||||||| |||||||||| | |||||| ||||||||||||| || ||||| ||| |
|
|
| T |
33742513 |
tcatggtcatgcataag-acattgattattctcgctgtgaaaatgctgcataggttgatggctaccttttaaatgaggaagagaggcattacagacagaa |
33742611 |
T |
|
| Q |
102 |
aatatgggaaaatcagaaccgcgagtatcttgaggtacagacaattttatt |
152 |
Q |
| |
|
|| ||||||||||||| ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
33742612 |
aacatgggaaaatcagtaccaagagtattatgaggtacaaacaattttatt |
33742662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 33620675 - 33620718
Alignment:
| Q |
179 |
gataaagtagtctgttagttattccactttctctcataattgtt |
222 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||| |||||| |
|
|
| T |
33620675 |
gataaagtagtctgttagttattccacattctatcatgattgtt |
33620718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University