View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14745_low_17 (Length: 263)
Name: NF14745_low_17
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_low_17 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 1684689 - 1684430
Alignment:
| Q |
19 |
gccattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatattt |
118 |
Q |
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| T |
1684689 |
gccattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatattt |
1684590 |
T |
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| Q |
119 |
ctcctcttacaatcatggtaagta---------------actttatattcagatatgaattatgctgtatcttataaagtattttccctaaacttgttac |
203 |
Q |
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| T |
1684589 |
ctcctcttacaatcatggtaagtaacttctattccaataactttatattcagatatgaattatactgtatcttataaagtattttctctaaacttgttac |
1684490 |
T |
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| Q |
204 |
atatgatatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattc |
263 |
Q |
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| T |
1684489 |
atatgatatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattc |
1684430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 1695110 - 1694985
Alignment:
| Q |
21 |
cattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttct |
120 |
Q |
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| T |
1695110 |
cattgttctgataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttct |
1695011 |
T |
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| Q |
121 |
cctcttacaatcatggtaagtaactt |
146 |
Q |
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| T |
1695010 |
cctcttacgatcatggtaagtaactt |
1694985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 1700216 - 1700096
Alignment:
| Q |
21 |
cattgttctgataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttct |
120 |
Q |
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| T |
1700216 |
cattgttctaataacaatgttggcacttcatggcactaaaaaaagatcgttaattgttggtgttctatgtgatgtcttcaatgtcatgatgtatgcatct |
1700117 |
T |
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| Q |
121 |
cctcttacaatcatggtaagt |
141 |
Q |
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| T |
1700116 |
cctcttacaatcatggtaagt |
1700096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 1971085 - 1971025
Alignment:
| Q |
86 |
tttgtgatgtcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaactt |
146 |
Q |
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| T |
1971085 |
tttgtgatatcttccccatattgatgtatgtctctcctcttaccatcgtggtaagtaactt |
1971025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 1694941 - 1694865
Alignment:
| Q |
182 |
gtattttccctaaacttgttacatatgatatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattc |
263 |
Q |
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| T |
1694941 |
gtattttctctaaacttgttacatatgatg-----aacaggcaacggttataagaaccaagagtgtgaaatacatgccattc |
1694865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 43151576 - 43151628
Alignment:
| Q |
95 |
tcttcaacatattgatgtatatttctcctcttacaatcatggtaagtaacttt |
147 |
Q |
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| T |
43151576 |
tcttgaacataattatgtatatctctcctcttacagtcatggtaagtaacttt |
43151628 |
T |
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