View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14745_low_18 (Length: 250)

Name: NF14745_low_18
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14745_low_18
NF14745_low_18
[»] chr7 (3 HSPs)
chr7 (5-250)||(28216802-28217057)
chr7 (5-226)||(28237674-28237906)
chr7 (5-250)||(28232845-28233101)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 28216802 - 28217057
Alignment:
Q  5 aatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaaagcagagc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |||    
T  28216802 aatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccaatacagattgaaattggtccgtaatcaccttccgaagtaaagcacagc 28216901  T
Q  105 g-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacc 193  Q
    |           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  28216902 gaaggttgtatgccacaagcatctcactagccttttccaacccagactccttcacctcctgcacat-ttttgtgaagcttagattgctgtccacaaaacc 28217000  T
Q  194 tattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggac 250  Q
     |||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||    
T  28217001 cattccatcaaaacacctgtcccacagcgatgctttttcagtctcttccattgggac 28217057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 28237674 - 28237906
Alignment:
Q  5 aatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaaagcagag- 103  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  28237674 aatttttctttggttgcattcagttcgtcttggcagttgctttcatgtcctagtacagattgaaattggtccataatcaccttcccaagtaaagcagagc 28237773  T
Q  104 ----------cgccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacc 193  Q
              |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |    
T  28237774 gaaggttgtacgccacaagcatctcactagctttttccaacccagactccttcacctcctgcacatcttttgcgaagcatagatttctgtccacaaaatc 28237873  T
Q  194 tattccatcgaaactcctgtcccgcagcgatgc 226  Q
     |||||||| || ||||  |||| |||||||||    
T  28237874 cattccatcaaacctcccatcccacagcgatgc 28237906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 28232845 - 28233101
Alignment:
Q  5 aatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaaagcagagc 104  Q
    |||||| ||||||||||| ||||||||||| ||| |||||| | |||||||| || || ||| ||||||||| |||||||||||||||||||||||||||    
T  28232845 aattttcctttggttgcaatcagttcgtcttggcagttgctatgatgtcccactaaagcttggaattggtccgtaatcaccttcccaagtaaagcagagc 28232944  T
Q  105 g-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtccacaaaacc 193  Q
    |           ||||||| || |||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  28232945 gaaggctgtacgccacaagaatctcaccagctttttccaacccagactccttcacctcctgcacgtcttttgtgaagcttagattgctgtccacaaaacc 28233044  T
Q  194 tattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggac 250  Q
     ||||||||||| |||||||||| |||||||||| |||||||| |||||||||||||    
T  28233045 cattccatcgaacctcctgtcccacagcgatgctatatcagtcccttccattgggac 28233101  T

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