View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14745_low_2 (Length: 624)

Name: NF14745_low_2
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14745_low_2
NF14745_low_2
[»] chr4 (6 HSPs)
chr4 (15-608)||(48962666-48963262)
chr4 (36-595)||(48958540-48959110)
chr4 (20-193)||(48965706-48965879)
chr4 (35-183)||(48911981-48912129)
chr4 (448-503)||(48966151-48966206)
chr4 (77-136)||(48951668-48951727)
[»] chr6 (2 HSPs)
chr6 (17-593)||(12589390-12589971)
chr6 (19-292)||(12482991-12483264)
[»] chr2 (6 HSPs)
chr2 (50-176)||(13440607-13440733)
chr2 (35-230)||(13448755-13448950)
chr2 (50-176)||(13455241-13455367)
chr2 (547-608)||(13449284-13449345)
chr2 (454-602)||(13441028-13441176)
chr2 (466-506)||(13462224-13462264)
[»] scaffold0536 (2 HSPs)
scaffold0536 (17-168)||(6162-6313)
scaffold0536 (17-166)||(10148-10297)
[»] chr5 (3 HSPs)
chr5 (57-176)||(28385748-28385867)
chr5 (44-185)||(12541086-12541227)
chr5 (534-608)||(12541593-12541667)
[»] chr8 (2 HSPs)
chr8 (77-176)||(12641124-12641223)
chr8 (330-608)||(12640684-12640967)
[»] chr7 (1 HSPs)
chr7 (95-181)||(3417171-3417257)


Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 15 - 608
Target Start/End: Original strand, 48962666 - 48963262
Alignment:
Q  15 cacagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagcct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48962666 cacagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagcct 48962765  T
Q  115 tgtgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcatggtctcatg 214  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  48962766 tgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatgagtccatttgtttttagcattgtctcatg 48962865  T
Q  215 catcatttccatgaatccggagaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaactaacgaatccaagtctgtgtga 314  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  48962866 caccatttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgatagagtgaggaaaatttggaacaacgaacaaatccaaatctgtgtga 48962965  T
Q  315 gatttcaatgaggggtttattctaagggattctatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgaccca 414  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48962966 gatttcaatgaggggtttattctaagggattccatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgaccca 48963065  T
Q  415 agtcataaacccaggggtatata-----ggtgacgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgta 509  Q
    ||||||||||||| |||||||||     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48963066 agtcataaacccatgggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgta 48963165  T
Q  510 gtatatcttggctgaggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaag 608  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||||||||||||| |||||||||    
T  48963166 gtatatcttggctgaggtggcgatgtcagtggtggaggacaaagattcaacaccatcaaggaggctg--ttgtttggaggggaagtcgatggtatgaag 48963262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 36 - 595
Target Start/End: Original strand, 48958540 - 48959110
Alignment:
Q  36 acaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgt 135  Q
    |||||| |||||| |||||| |||| ||||||||||| || || ||||||||||||| | ||||| ||||||||| |||||||||| ||| |||||| ||    
T  48958540 acaacattctcatttcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgt 48958639  T
Q  136 agtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcatggtctcatgcatcatttccatgaatccgga 235  Q
    |||||||||||||||||||||| |||||||||  ||||||| |||  |||||||| ||  |||| || || |||||| |||||||||||||||||||||     
T  48958640 agtgttcgatgcactcttcaccatcaagttcaatgaagttgttgatgatgagtcccttacttttgaggattgtctcaagcatcatttccatgaatccggt 48958739  T
Q  236 gaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaactaacgaatc------caagtctgtgtgagatttcaatgagggg 329  Q
    ||||  ||| ||||||||||| ||||||||||  || ||||||||||||||||||   || ||| |      | | || ||||||||    ||||| |||    
T  48958740 gaatatctttggcggctttgtacacaaggtgatggaatgaggaaaatttggaacagtgaatgaacctggactcgaatccgtgtgagaacaaaatgaaggg 48958839  T
Q  330 tttattctaagggattctatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccagg 429  Q
    ||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||| |||||||| || |||||||||||  ||||||||||||||||||    
T  48958840 tttattctaagggattccatgagggagacggtaaagagggagaaaccagtgaaggcgatggtgggaatttgaagcttatgggccaagtcataaacccagg 48958939  T
Q  430 ggtatat--ag---gtgacgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctga 524  Q
    ||| |||  ||   | ||  |||||||||||||||||||||||||||||||| ||||| ||| |  ||||||||||||| ||||||||||||||| | ||    
T  48958940 ggtttatgcagtcagcgattatgcagtcaggtggatccttctccatgaaatcgtgaataggttcacggaggagcattgccccgtagtatatcttgccgga 48959039  T
Q  525 ggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagt 595  Q
    |||| ||  ||| | | ||||||||| ||||||||| |  ||||||||||| ||||||| |||||| ||||    
T  48959040 ggtgtcaccgtcggaggtggaggacatagattcaacgccgtcagggaggccaacttgttgggagggaaagt 48959110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 48965706 - 48965879
Alignment:
Q  20 acactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtga 119  Q
    ||||||||| |||| |||  ||||||| |||||||| ||||||||||||||||| | ||| |||||||||||| ||||||| |||||||||||||| |||    
T  48965706 acactcttgcacgctcactgcactctcttgtcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatga 48965805  T
Q  120 cctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatt 193  Q
    || ||| |  || | || | ||  ||| ||||||| |||||||| |||||||| ||| ||||||||||||||||    
T  48965806 cccgtgctactcacataatatttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccatt 48965879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 48912129 - 48911981
Alignment:
Q  35 cacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcg 134  Q
    |||||||||||| | ||| || || || ||||||||||  | | |||||||||||||| ||||||| ||||||||||| |||||||  || |||||||||    
T  48912129 cacaacactctcttctcctctctcagccttctcttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcg 48912030  T
Q  135 tagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaa 183  Q
    |||||||||||  |||||||||||||||||||||| || ||| ||||||    
T  48912029 tagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaa 48911981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 503
Target Start/End: Original strand, 48966151 - 48966206
Alignment:
Q  448 cagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgc 503  Q
    |||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||    
T  48966151 cagtcaggtggatctttctccatgaaattctgaattggttcttggaggagcattgc 48966206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 48951668 - 48951727
Alignment:
Q  77 tttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgta 136  Q
    |||||||| ||||||  | ||||| ||||||||||||||||||||  |||||||||||||    
T  48951668 tttgcgaacaagagaggccggaccaagatgccaagccttgtgaccgatggttttctcgta 48951727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 17 - 593
Target Start/End: Complemental strand, 12589971 - 12589390
Alignment:
Q  17 cagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttg 116  Q
    |||||||||||| |||  |||||||||||||| |||||| ||||||||||||||||| | |||| ||||||||||| ||||||| |||||||||||||||    
T  12589971 cagacactcttgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttg 12589872  T
Q  117 tgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcatggtctcatgca 216  Q
    ||||||||||||||||| ||||||| ||  |||||||  || |||||||||||||||||| | ||||||||||||||  |||| || || | |||| |||    
T  12589871 tgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagtccattacttttgagtattgcctcaagca 12589772  T
Q  217 tcatttccatgaatccggagaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaactaacgaatccaagtctgtgtgaga 316  Q
    || ||||||||| | ||| ||| | ||| || || || ||||| ||||||| |   |||||||||||||||||||| || ||| | || ||  |||||||    
T  12589771 tcgtttccatgacttcggtgaacgcctttggtggattagtgcataaggtgatacgatgaggaaaatttggaacaacaaaggaacctaaatccatgtgaga 12589672  T
Q  317 tttcaatgaggggtttattctaagggattctatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaag 416  Q
     |  | | |  ||||| ||||||||||||| |  || ||||| ||||| | ||||||| | |||||||| | | ||||||| |||||||||||  ||| |    
T  12589671 atgaagtaaatggtttgttctaagggattccaaaagagagactgtaaagagggagaaaacggtgaaggcgaggatggggatttgaagcttatgggccatg 12589572  T
Q  417 tcataaacccaggggtat-----ataggtgacgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgc-gccgtag 510  Q
    ||||||||||  ||||||     || ||  | |||| |||||||||||||||||| ||| ||||||  ||| ||| |  |||||||| |||| || |||     
T  12589571 tcataaacccctgggtatatgcaatcggcaatgatgtagtcaggtggatccttctgcatcaaatccccaatgggttcaaggaggagctttgcggctgta- 12589473  T
Q  511 tatatcttggctgaggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaa 593  Q
    || ||||||   ||||||||   ||| ||| |||||||||||||||| ||||  ||||||||||||||||||  |||||||||    
T  12589472 tagatcttgatggaggtggcgtggtcggtggtggaggacaaagattcgacaccgtcagggaggccgacttgtagggaggggaa 12589390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 12483264 - 12482991
Alignment:
Q  19 gacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtg 118  Q
    ||||||| || |||| |||||||||||| | |||||| ||||| || |||||||| | ||  | |||||| |||  |||||| | |||||||||||||||    
T  12483264 gacactcatgcacgctcacaacactctcgtttcccctctctgccttttcttgaacagtttcacaaataagtgaatgtggacctaaatgccaagccttgtg 12483165  T
Q  119 acctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcatggtctcatgcatc 218  Q
    |||  || |||| ||||||||||||| ||| ||||  || || ||||||| |||| |  |||| ||||||| |||  ||||  | || || ||| |||||    
T  12483164 acccatgattttttcgtagtgttcgacgcattctttgccatccagttcagtgaagctattgacgatgagtctattacttttgtgtattgtttcaagcatc 12483065  T
Q  219 atttccatgaatccggagaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaac 292  Q
    ||||| | ||||   | |||   ||| || || |||||||||||||||| |  |||||||||||||||||||||    
T  12483064 atttctaggaatattgtgaacatctttggtggttttgtgcacaaggtgatatggtgaggaaaatttggaacaac 12482991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 13440607 - 13440733
Alignment:
Q  50 tcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcac 149  Q
    |||||| |||||||||||||||| || ||| ||||||||||||  |||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  13440607 tcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcac 13440706  T
Q  150 tcttcaccgtcaagttcagcgaagttg 176  Q
    ||||| ||||||||||||| |||||||    
T  13440707 tcttctccgtcaagttcagtgaagttg 13440733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 13448755 - 13448950
Alignment:
Q  35 cacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcg 134  Q
    |||| ||| ||||| |||||| |||| |||||||||| | | ||||||||||||||||  |||||| ||||||||| |||||||||| |||| |||||||    
T  13448755 cacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcg 13448854  T
Q  135 tagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcatggtctcatgcatcatttccatgaat 230  Q
    |||||||  ||||||||||| || |||||||||  ||||||| |||  || ||| | ||  |||| ||||  |||||| |||||||| ||||||||    
T  13448855 tagtgttgtatgcactcttctccatcaagttcactgaagttgttgatgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaat 13448950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 13455241 - 13455367
Alignment:
Q  50 tcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcac 149  Q
    |||||| |||| ||| |||||||||| | ||| ||||||||||  |||||| | ||||||| ||||||||||||| ||||| |||||||||| |||||||    
T  13455241 tcccctctctgatttttcttgaacggttctgcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcac 13455340  T
Q  150 tcttcaccgtcaagttcagcgaagttg 176  Q
    ||||| || |||| ||||  |||||||    
T  13455341 tcttctccatcaaattcactgaagttg 13455367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 547 - 608
Target Start/End: Original strand, 13449284 - 13449345
Alignment:
Q  547 gacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaag 608  Q
    |||| |||||||| ||  ||||||||||||||||||| |||||||||||| ||||| |||||    
T  13449284 gacatagattcaataccttcagggaggccgacttgttgggaggggaagtcaacggtgtgaag 13449345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 602
Target Start/End: Original strand, 13441028 - 13441176
Alignment:
Q  454 ggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatggaggacaaag 553  Q
    |||||||| |||||||||||||||| ||| | ||| |||||||||||||||||   ||  |||||    |||||   |  ||||||| |||| |||| ||    
T  13441028 ggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatag 13441127  T
Q  554 attcaacacaatcagggaggccgacttgtttggaggggaagtcgacggt 602  Q
    ||||||  |  ||||||||| ||||||||| |||||| |||||||||||    
T  13441128 attcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggt 13441176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 466 - 506
Target Start/End: Original strand, 13462224 - 13462264
Alignment:
Q  466 tccatgaaatcctgaattggtccgtggaggagcattgcgcc 506  Q
    ||||||||||||| ||| ||||| |||||||||||||||||    
T  13462224 tccatgaaatcctcaatgggtccatggaggagcattgcgcc 13462264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 6313 - 6162
Alignment:
Q  17 cagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttg 116  Q
    ||||||||| || || | ||||||||| |  |||||||| | |||||| |||||||| | | | |||||||||||| | ||||| ||||||||||| |||    
T  6313 cagacactcatgcacactcacaacactttgttgtcccctctgtgctttttcttgaacagttctacgaataagagaagccggaccaagatgccaagctttg 6214  T
Q  117 tgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcag 168  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  6213 tgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttcag 6162  T

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Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 10297 - 10148
Alignment:
Q  17 cagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttg 116  Q
    ||||||||| || || | |||||||||||  | ||| || |||| |||||||||||| | | | |||| |||| || ||||||  ||||||||||| ||     
T  10297 cagacactcatgcacactcacaacactctgttctcctctctctgttttctcttgaacagttctacgaacaagataagctggactaagatgccaagctttc 10198  T
Q  117 tgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttc 166  Q
    ||||| || ||||||| |||||||||||||  || || ||||||||||||    
T  10197 tgacccgtagttttcttgtagtgttcgatgtgctatttaccgtcaagttc 10148  T

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Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 28385748 - 28385867
Alignment:
Q  57 tctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcac 156  Q
    ||||||||||||||||| | ||| |||||||  |||  |||||| |||||||||||||||||||| ||||||||||||||||||| ||  |||||||| |    
T  28385748 tctgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctc 28385847  T
Q  157 cgtcaagttcagcgaagttg 176  Q
    | ||||||||| | ||||||    
T  28385848 catcaagttcaacaaagttg 28385867  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 12541086 - 12541227
Alignment:
Q  44 ctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcg 143  Q
    ||||| ||||||  ||||||||||||||| |  |||  |||||| ||||  |||||| |||||||||||||||||||| ||||||||||||||||||| |    
T  12541086 ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg 12541185  T
Q  144 atgcactcttcaccgtcaagttcagcgaagttgctgacaatg 185  Q
    |  |||||||| || ||||||||| | |||||| ||| ||||    
T  12541186 acacactcttctccatcaagttcaacaaagttgttgataatg 12541227  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 608
Target Start/End: Original strand, 12541593 - 12541667
Alignment:
Q  534 gtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaag 608  Q
    ||||||| ||||||||| ||||||||  |  | ||||||| ||||||||| ||||||||||||||| || |||||    
T  12541593 gtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtgaag 12541667  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 12641223 - 12641124
Alignment:
Q  77 tttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttg 176  Q
    ||||||||||||| ||  |||||| |||||||||||||||| |||  |||||||||| ||||||| |||||| |||||||| ||||||||| | ||||||    
T  12641223 tttgcgaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttg 12641124  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 330 - 608
Target Start/End: Complemental strand, 12640967 - 12640684
Alignment:
Q  330 tttattctaagggattctatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccagg 429  Q
    |||||||| | ||||||||||||||| || ||||| | | ||||    |||||||||||||||| ||| ||| ||||||   ||||||||| || ||| |    
T  12640967 tttattcttaaggattctatgagggatactgtaaagaggaagaatggggtgaaggcaatggtggagatatgaggcttattggccaagtcattaatccaag 12640868  T
Q  430 ggtatata-----ggtgacgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctga 524  Q
    |||||| |     ||  | |||| |||||||| |||||||||||| ||| ||   ||| ||| | |||||||||||||| || |   ||||||||||       
T  12640867 ggtatacacagtcggcaatgatgtagtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccat 12640768  T
Q  525 ggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaag 608  Q
    |||| ||  || |||| |||||||||| |||||||| |  || || ||  ||||||||| |||||||||||||||||| |||||    
T  12640767 ggtgtcagggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaag 12640684  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 3417257 - 3417171
Alignment:
Q  95 tggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgac 181  Q
    |||||| |||||||||||||||||||||  ||||||||| |||||||  || |||||||| || |||||||||  ||||||| ||||    
T  3417257 tggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgac 3417171  T

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