View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14745_low_20 (Length: 236)
Name: NF14745_low_20
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_low_20 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 679 - 447
Alignment:
| Q |
1 |
tcttccaagtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagtagtagtttttggtggagattt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |
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| T |
679 |
tcttccaagcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagcagtggtttttgatggagattt |
580 |
T |
|
| Q |
101 |
cagacagattttgcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagttatgatttgccgatatcacg |
200 |
Q |
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| T |
579 |
cagacagattttgccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagttatgatttgccgttatcacg |
480 |
T |
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| Q |
201 |
aaacatgaatggtgatgcaattgatgatgtcca |
233 |
Q |
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| T |
479 |
aaacatgaatggtgatgcaattgatgatgtcca |
447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4649662 - 4649430
Alignment:
| Q |
1 |
tcttccaagtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagtagtagtttttggtggagattt |
100 |
Q |
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| T |
4649662 |
tcttccaagcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagcagtggtttttgatggagattt |
4649563 |
T |
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| Q |
101 |
cagacagattttgcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagttatgatttgccgatatcacg |
200 |
Q |
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| T |
4649562 |
cagacagattttgccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagttatgatttgccgttatcacg |
4649463 |
T |
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| Q |
201 |
aaacatgaatggtgatgcaattgatgatgtcca |
233 |
Q |
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| T |
4649462 |
aaacatgaatggtgatgcaattgatgatgtcca |
4649430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 47400155 - 47400095
Alignment:
| Q |
49 |
gaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacagat |
109 |
Q |
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| T |
47400155 |
gaaataaaaacattccatttggtggtaaagttgtggtttttggtggtgacttcagacagat |
47400095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 9825372 - 9825404
Alignment:
| Q |
82 |
tagtttttggtggagatttcagacagattttgc |
114 |
Q |
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| T |
9825372 |
tagtttttggtggagattttagacagattttgc |
9825404 |
T |
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