View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14745_low_23 (Length: 226)
Name: NF14745_low_23
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28217348 - 28217128
Alignment:
| Q |
1 |
ggaagaatgtcaccgctaaatgacgccgagttcaagacctatttggcaaaggctagagaaaagagagccacaattttgcaatctggtgccgctgaagcaa |
100 |
Q |
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| T |
28217348 |
ggaagaatgtctccgctaaatgacgccgagttcaagacctatttggcaaaggctagagaaaagagagccacagttttgcaatctggtgccgctgaagcaa |
28217249 |
T |
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| Q |
101 |
aattggacgttagtggtgttacaatctgcaagctcaagagaaaaggtggggggaactcagaggaggggtcaccgtcactttcagacacagaacctattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28217248 |
aattggacgttagtggtgttacaatctgcaagctcaagagaaaaggtgggggaaactcagaggaggggtcaccgtcactttcagacacagaacctattgc |
28217149 |
T |
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| Q |
201 |
tgcactaccttttgaacaatga |
222 |
Q |
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||||| ||| |||||||||||| |
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| T |
28217148 |
tgcaccacc-tttgaacaatga |
28217128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28238204 - 28237980
Alignment:
| Q |
1 |
ggaagaatgtcaccgctaaatgacgccgagttcaagacctatttggcaaaggctagagaaaagagagccacaattttgcaatctggtgccgctgaagcaa |
100 |
Q |
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||||||||||| || |||||||| | |||||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
28238204 |
ggaagaatgtctccactaaatgaagaggagttcaagacctatttggcgaaggatagagaaaagagagccacagtgttgcaatctggtgatgctgaagcaa |
28238105 |
T |
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| Q |
101 |
aattggacgttagtggtgttacaatctgcaagctcaagagaaaaggtggggggaactcagaggaggggtcaccgtcactttcagacacagaacctattgc |
200 |
Q |
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| T |
28238104 |
acttggacgttagtggtgttgcaatctgcaagctcaagagaaaaggtgggggaaactcaaaggaggggtcaccgtcactttcagacgcagaacctattgc |
28238005 |
T |
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| Q |
201 |
tgcactaccttttgaacaatgaggcc |
226 |
Q |
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| T |
28238004 |
tgcacaacc-tttgaacaatgaggcc |
28237980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 28233392 - 28233188
Alignment:
| Q |
1 |
ggaagaatgtcaccgctaaatgacgccgagttcaagacctatttggcaaaggctagagaaaagagagccacaattttgcaatctggtgccgctgaagcaa |
100 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
28233392 |
ggaagaatgtctccgctaaatgaagccgagttcaagacctatttggctaaggctagagaaaagagagccacggttttgcaatctggtgctgctgaagcaa |
28233293 |
T |
|
| Q |
101 |
aattggacgttagtggtgttacaatctgcaagctcaagagaaaaggtggggggaactcagaggaggggtcaccgtcactttcagacacagaacctattgc |
200 |
Q |
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|||||||||||||| ||||||||||| |||| ||||| ||||||||||| || | |||| || | ||| |||||||||||||||||| |||||||||||| |
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| T |
28233292 |
aattggacgttagtagtgttacaatccgcaaactcaaaagaaaaggtggcggaagctcaaagaatgggccaccgtcactttcagacaaagaacctattgc |
28233193 |
T |
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| Q |
201 |
tgcac |
205 |
Q |
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||||| |
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| T |
28233192 |
tgcac |
28233188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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