View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14745_low_4 (Length: 502)
Name: NF14745_low_4
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 501
Target Start/End: Complemental strand, 700347 - 699858
Alignment:
| Q |
12 |
atataacctcagttaacgcaagcggagacctaagtggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctgaggtactcttga |
111 |
Q |
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| T |
700347 |
atataacctcagttaacgcaagcggagacctaagtagaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctgaggtactcttga |
700248 |
T |
|
| Q |
112 |
gtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcaggcaaaatc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
700247 |
gtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcaggcaaaacc |
700148 |
T |
|
| Q |
212 |
catgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcaggaaaaggcg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700147 |
catgcatttgtttgaccatacatagtctcgggtctcaacgtcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcaggaaaaggcg |
700048 |
T |
|
| Q |
312 |
ataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaa |
411 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
700047 |
ataccaactccatcttgataatcatatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaa |
699948 |
T |
|
| Q |
412 |
aattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcat |
501 |
Q |
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| T |
699947 |
aattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacgaaagaatcaaaataagggttcat |
699858 |
T |
|
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Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 47 - 501
Target Start/End: Original strand, 23261811 - 23262265
Alignment:
| Q |
47 |
ggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctat |
146 |
Q |
| |
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||||| ||||||||||| ||||| || ||||||||||| ||||| |||| ||||||||| || ||||| || ||||||||||| ||||| ||||| |||| |
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| T |
23261811 |
ggaagcccgatcaaatcctgacccgtaagctcaagcaaacaagtcggtttctgaggtaccctagagtgattttggtaagcaagattaagcgctgccctat |
23261910 |
T |
|
| Q |
147 |
gtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtct |
246 |
Q |
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| | | |||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| | ||| |||||||||||||||||||||||||| || || |
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| T |
23261911 |
gcgctacaacaaacacctccgtttcattaatctcaaaagccccatatttcccatcaggcaacacccaagcatttgtttgaccatacatagtctcaggcct |
23262010 |
T |
|
| Q |
247 |
caacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcaggaaaaggcgataccaactccatcttgataatcgtatactcttga |
346 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| || | | ||||||| || ||||||||||| || |||| ||||||||| ||||||||||||||||| |
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|
| T |
23262011 |
caacgtcgccgcagcaagaaaaaccttctttccctccaaaaccttaaacttctcaggaaaaggagaaaccacctccatcttaataatcgtatactcttgc |
23262110 |
T |
|
| Q |
347 |
ggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttcccca |
446 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||| ||||||||||| || |
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| T |
23262111 |
ggctgaacaccttcaccactagccctatcatgatccgcacaaggctgtccatccaatggcgaaaaaactgtatacctaacatccttaacaaccttaccag |
23262210 |
T |
|
| Q |
447 |
atgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcat |
501 |
Q |
| |
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| | |||||| |||||||| |||||||||||||||| |||||||||||| ||||| |
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|
| T |
23262211 |
acgccttcaacttcctcatatgccacctaacaaaagcatcaaaataaggattcat |
23262265 |
T |
|
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