View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14745_low_7 (Length: 425)

Name: NF14745_low_7
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14745_low_7
NF14745_low_7
[»] chr1 (6 HSPs)
chr1 (1-385)||(25780687-25781066)
chr1 (380-419)||(27578306-27578345)
chr1 (381-422)||(36669279-36669320)
chr1 (381-422)||(6829694-6829735)
chr1 (381-422)||(13813679-13813720)
chr1 (386-422)||(25130824-25130860)
[»] chr8 (7 HSPs)
chr8 (381-422)||(41273636-41273677)
chr8 (381-422)||(6656248-6656289)
chr8 (381-422)||(6736650-6736691)
chr8 (381-422)||(36593695-36593736)
chr8 (381-422)||(6745951-6745993)
chr8 (381-422)||(30927840-30927881)
chr8 (386-422)||(19723120-19723156)
[»] chr2 (6 HSPs)
chr2 (381-422)||(3195996-3196037)
chr2 (381-422)||(23047992-23048033)
chr2 (381-422)||(27307154-27307195)
chr2 (381-422)||(37966477-37966518)
chr2 (382-422)||(34144462-34144502)
chr2 (382-422)||(38246661-38246701)
[»] chr6 (5 HSPs)
chr6 (381-425)||(3660262-3660306)
chr6 (380-422)||(2056904-2056946)
chr6 (381-425)||(3339408-3339452)
chr6 (381-425)||(27334982-27335026)
chr6 (381-425)||(27395722-27395766)
[»] scaffold0514 (1 HSPs)
scaffold0514 (381-422)||(1405-1446)
[»] scaffold0004 (1 HSPs)
scaffold0004 (381-422)||(249051-249092)
[»] scaffold0002 (1 HSPs)
scaffold0002 (381-422)||(147165-147206)
[»] chr7 (5 HSPs)
chr7 (381-422)||(27164746-27164787)
chr7 (380-425)||(29162187-29162232)
chr7 (381-422)||(42431844-42431885)
chr7 (381-419)||(30864326-30864364)
chr7 (386-422)||(38978613-38978649)
[»] chr5 (7 HSPs)
chr5 (381-422)||(3263417-3263458)
chr5 (381-422)||(15622165-15622206)
chr5 (381-422)||(30574286-30574327)
chr5 (381-422)||(33823603-33823644)
chr5 (381-425)||(11464032-11464076)
chr5 (380-422)||(9596722-9596764)
chr5 (381-422)||(12512914-12512955)
[»] chr4 (6 HSPs)
chr4 (381-422)||(5208236-5208277)
chr4 (381-422)||(27001318-27001359)
chr4 (381-422)||(47106032-47106073)
chr4 (382-422)||(31221534-31221574)
chr4 (381-422)||(8026673-8026714)
chr4 (381-422)||(51377202-51377243)
[»] chr3 (5 HSPs)
chr3 (381-422)||(13159782-13159823)
chr3 (381-422)||(36819077-36819118)
chr3 (381-422)||(53102811-53102852)
chr3 (381-422)||(30400065-30400106)
chr3 (381-422)||(34021372-34021413)
[»] scaffold0121 (1 HSPs)
scaffold0121 (387-425)||(29901-29939)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 25781066 - 25780687
Alignment:
Q  1 catttgtttgttaaatgtaatttttatggtagaggtgtctcgttgcatcttggttagatttctcaacgacaacgcatgacaatttacatgatcatctggt 100  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||    
T  25781066 catttgtttgttaaatgtaatttttatggt---------tcgttgcatcttggttaggtttctcaacggcaacgcatgactatttacatgatcatctggt 25780976  T
Q  101 tcagtttggtgggttagaggttcatttgagaaaggtttggttcttaatctcagtttggtggttt-gaattattttgaa-gagagagaaatagacacacat 198  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| | | ||||||||| |||||||||||||||||| ||    
T  25780975 tcagtttggtgggttagaggatcatttgagaaaggtttggttcttaacatcagtttggtggttttggaatattttgaatgagagagaaatagacacatat 25780876  T
Q  199 tctaacttaaccatgatcacatacaatcttttggtgaaaggttaagttgcagtcttttttattgttgaaattgaattatgatactttcaattttgattat 298  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||    
T  25780875 tctaacttaaccatgatcacatacaatctttcagtgaaaggttaagttgcagtctttttgattgttgaaatcgaattatgttactttcgattttgattat 25780776  T
Q  299 catttttagaagcttataacctcattcttcatttata---tgtaattag-tttttgtcaaacaattaatagtttatactttatagtcattc 385  Q
    ||||||||||||||  |||||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25780775 catttttagaagct--taacctcattcttcgtttatatgttgtaattagttttttgtcaaacaattaatagtttatactttatagtcattc 25780687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 27578345 - 27578306
Alignment:
Q  380 tcattccatgacaattttagtaacaaccttgtttttctct 419  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27578345 tcattccatgacaattttagtaacaaccttgtttttctct 27578306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 36669279 - 36669320
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  36669279 cattccatgacaactttagtgacaaccttgtttttctctctt 36669320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 6829694 - 6829735
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  6829694 cattccatgacaactttagtgacaatcttgtttttctctctt 6829735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 13813720 - 13813679
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||| |||| |||||| |||||||||||||||||||||    
T  13813720 cattccataacaactttagtgacaaccttgtttttctctctt 13813679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 25130860 - 25130824
Alignment:
Q  386 catgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||| |||||| |||||||||||||||||||||    
T  25130860 catgacaactttagtgacaaccttgtttttctctctt 25130824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 41273677 - 41273636
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  41273677 cattccatgacaactttagtaacaaccttgtttttctctctt 41273636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 6656248 - 6656289
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  6656248 cattccatgataattttagtgacaaccttgtttttctctctt 6656289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 6736650 - 6736691
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  6736650 cattccatgataattttagtgacaaccttgtttttctctctt 6736691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 36593695 - 36593736
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  36593695 cattccatgacaactttagtgacaaccttgtttttctctctt 36593736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 6745951 - 6745993
Alignment:
Q  381 cattccatgacaattttagtaacaacctt-gtttttctctctt 422  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  6745951 cattccatgacaattttagtgacaaccttagtttttctctctt 6745993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 30927840 - 30927881
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||| |||||||| |||||| |||||||||||||||||||||    
T  30927840 catttcatgacaactttagtgacaaccttgtttttctctctt 30927881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 19723120 - 19723156
Alignment:
Q  386 catgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||| |||||| |||||||||||||||||||||    
T  19723120 catgacaactttagtgacaaccttgtttttctctctt 19723156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 3195996 - 3196037
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  3195996 cattccatgacaactttagtaacaaccttgtttttctctctt 3196037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 23047992 - 23048033
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  23047992 cattccatgacaactttagtgacaaccttgtttttctctctt 23048033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 27307154 - 27307195
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||| ||||||||||||    
T  27307154 cattccatgacaactttagtgacaaccttatttttctctctt 27307195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 37966518 - 37966477
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||| |||||||| |||||| |||||||||||||||||||||    
T  37966518 catttcatgacaactttagtgacaaccttgtttttctctctt 37966477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 34144462 - 34144502
Alignment:
Q  382 attccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||||| |||||| |||| ||||||||||||||||    
T  34144462 attccatgacaactttagtgacaatcttgtttttctctctt 34144502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 38246661 - 38246701
Alignment:
Q  382 attccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  38246661 attccatgacaactttagtgacaaccttgtttctctctctt 38246701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 3660262 - 3660306
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctcttttt 425  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  3660262 cattccatgacaactttagtgacaaccttgtttttctctcttttt 3660306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 2056946 - 2056904
Alignment:
Q  380 tcattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||||||| |||||| |||||||||||| ||||||||    
T  2056946 tcattccatgacaactttagtgacaaccttgtttctctctctt 2056904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 3339408 - 3339452
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctcttttt 425  Q
    |||| |||||||| |||||| |||| |||||||||||||||||||    
T  3339408 catttcatgacaactttagtgacaatcttgtttttctctcttttt 3339452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 27335026 - 27334982
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctcttttt 425  Q
    |||| |||||||| |||| | ||||||||||||||||||||||||    
T  27335026 catttcatgacaactttaatgacaaccttgtttttctctcttttt 27334982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 27395766 - 27395722
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctcttttt 425  Q
    |||| |||||||| |||| | ||||||||||||||||||||||||    
T  27395766 catttcatgacaactttaatgacaaccttgtttttctctcttttt 27395722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 1405 - 1446
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  1405 cattccatgacaattttagtgacaactttgtttttctctctt 1446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 249051 - 249092
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  249051 cattccatgacaactttagtgacaaccttgtttttctctctt 249092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 147165 - 147206
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  147165 cattccatgacaactttagtgacaaccttgtttttctctctt 147206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 27164746 - 27164787
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  27164746 cattccatgacaattttagtgacaactttgtttttctctctt 27164787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 29162187 - 29162232
Alignment:
Q  380 tcattccatgacaattttagtaacaaccttgtttttctctcttttt 425  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||    
T  29162187 tcattccatgacaactttagtgacaatcttgtttttctctcttttt 29162232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 42431885 - 42431844
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  42431885 cattccatgacaactttagtgacaaccttgtttttctctctt 42431844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Original strand, 30864326 - 30864364
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctct 419  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  30864326 cattccatgacaactttagtgacaaccttgtttttctct 30864364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 38978649 - 38978613
Alignment:
Q  386 catgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||| |||||| |||||||||||||||||||||    
T  38978649 catgacaactttagtgacaaccttgtttttctctctt 38978613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 3263417 - 3263458
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  3263417 cattccatgacaactttagtgacaaccttgtttttctctctt 3263458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 15622206 - 15622165
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  15622206 cattccatgacaactttagtgacaaccttgtttttctctctt 15622165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 30574286 - 30574327
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  30574286 cattccatgacaattttagtgacaactttgtttttctctctt 30574327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 33823603 - 33823644
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  33823603 cattccatgacaactttagtgacaaccttgtttttctctctt 33823644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 11464032 - 11464076
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctcttttt 425  Q
    |||||||| |||| |||||| ||||||||||||||||||||||||    
T  11464032 cattccataacaactttagtgacaaccttgtttttctctcttttt 11464076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 9596722 - 9596764
Alignment:
Q  380 tcattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||||||||||| |||||| |||| ||||||||||||||||    
T  9596722 tcattccatgacaactttagtgacaatcttgtttttctctctt 9596764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 12512955 - 12512914
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  12512955 cattccatgacaactttagtgacaatcttgtttttctctctt 12512914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 5208236 - 5208277
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  5208236 cattccatgacaactttagtgacaaccttgtttttctctctt 5208277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 27001318 - 27001359
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  27001318 cattccatgacaactttagtgacaaccttgtttttctctctt 27001359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 47106073 - 47106032
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  47106073 cattccatgacaactttagtgacaaccttgtttttctctctt 47106032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 31221574 - 31221534
Alignment:
Q  382 attccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  31221574 attccatgacaattttagtgacaatcttgtttttctctctt 31221534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 8026673 - 8026714
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| ||||| |||||||||||||||    
T  8026673 cattccatgacaactttagtgacaactttgtttttctctctt 8026714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 51377202 - 51377243
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    |||||| |||||| |||||| |||||||||||||||||||||    
T  51377202 cattccttgacaactttagtgacaaccttgtttttctctctt 51377243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 13159823 - 13159782
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  13159823 cattccatgacaactttagtgacaaccttgtttttctctctt 13159782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 36819118 - 36819077
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  36819118 cattccatgacaactttagtgacaaccttgtttttctctctt 36819077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 53102811 - 53102852
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||||||||||||||||||||    
T  53102811 cattccatgacaactttagtgacaaccttgtttttctctctt 53102852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 30400065 - 30400106
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  30400065 cattccatgacaactttagtgacaatcttgtttttctctctt 30400106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 34021372 - 34021413
Alignment:
Q  381 cattccatgacaattttagtaacaaccttgtttttctctctt 422  Q
    ||||||||||||| |||||| ||||| |||||||||||||||    
T  34021372 cattccatgacaactttagtgacaactttgtttttctctctt 34021413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 29939 - 29901
Alignment:
Q  387 atgacaattttagtaacaaccttgtttttctctcttttt 425  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  29939 atgacaactttagttacaaccttgtttttctctcttttt 29901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University