View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14745_low_8 (Length: 418)
Name: NF14745_low_8
Description: NF14745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14745_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 56 - 413
Target Start/End: Complemental strand, 41969005 - 41968662
Alignment:
| Q |
56 |
ttcatatgaaatgataatcctacctttaacattctctcaaccaagtattttaatcacctctcaatcatattacttagcaaactaagactgcgatatggtg |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41969005 |
ttcatatgaaatgataatcctacctttaacattctctcaaccaagtattttaatcacctctcaatcatattacttagcaaactaagactgcgatatggtg |
41968906 |
T |
|
| Q |
156 |
ggtatagaatgtagtatcatgatggtagtatccaatccaactacatgaatgcgaaaaacttctaactgtcggggagctgcatacctaatgtagcctaact |
255 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41968905 |
ggtatagaatgtagtatc--------------caatccaactacatgaatgcgaaaaacttctaactgtcggggagctgcatacctaatgtagcctaact |
41968820 |
T |
|
| Q |
256 |
aaagaacaagtcaacgtaaacaatttgtaacataaaaagtcaacttgcaataatcacttcaattaattaagcacgcaatcgcccagtacttagccgcgaa |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41968819 |
aaagaacaagtcaacgtaaacaatttgtaacataaaaagtcaacttgcaataatcacttcaattaattaggcacgcaatcgcccagtacttagccgcgaa |
41968720 |
T |
|
| Q |
356 |
agctgaaataatttgttgacaaagatttgttgaaactttcatttatttcctcctatgc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41968719 |
agctgaaataatttgttgacaaagatttgttgaaactttcatttatttcctcctatgc |
41968662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 41969097 - 41969057
Alignment:
| Q |
18 |
gtattaagaaccacatcaaactatttcaactatgtttgttc |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41969097 |
gtattaagaaccacatcaaactatttcaactatgtttgttc |
41969057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University