View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14746_high_1 (Length: 658)
Name: NF14746_high_1
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_high_1 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 18 - 658
Target Start/End: Complemental strand, 4775877 - 4775243
Alignment:
| Q |
18 |
atagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
4775877 |
atagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacattggag |
4775778 |
T |
|
| Q |
118 |
ctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagct |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775777 |
ctacatatctatgtgcaaaccctgtctttca---ctctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagct |
4775681 |
T |
|
| Q |
218 |
tcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775680 |
tcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagtt |
4775581 |
T |
|
| Q |
318 |
attgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggcaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4775580 |
attgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaat |
4775481 |
T |
|
| Q |
418 |
catatcccatagtaaatagccaattagtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgtta |
517 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775480 |
catatcccat---------------agtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgtta |
4775396 |
T |
|
| Q |
518 |
ac---attttctattgacttgaatataacagaacg---------tatacattgcaggtggctacagaggatagatggatttggcatttacccacatctca |
605 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775395 |
acattattttctattgacttgaatataacagaacgtatttatcctatacatcgcaggtggctacagaggatagatggatttggcatttacccacatctca |
4775296 |
T |
|
| Q |
606 |
tagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaact |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775295 |
tagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaact |
4775243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 636
Target Start/End: Complemental strand, 29553195 - 29553130
Alignment:
| Q |
571 |
gaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaa |
636 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| ||||||| ||||| |||||| | ||||||| |
|
|
| T |
29553195 |
gaggatagatggatttggcatttacactcttctcagagttacacagttagcaatgcgtataataaa |
29553130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 43061238 - 43060836
Alignment:
| Q |
18 |
atagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggag |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||| ||| |
|
|
| T |
43061238 |
atagcagccactactcaggaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagag |
43061139 |
T |
|
| Q |
118 |
ctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgc---caagaa |
214 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| || ||||||||| || |||||||||||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
43061138 |
ctacatatctatgtgcaaaccctgtttttcacta---taggatgaaacacattgccatagattatcattttgtttgcgatctcgttgctgctgccaagaa |
43061042 |
T |
|
| Q |
215 |
gcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattgga |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43061041 |
gcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcacaaagccgttatcctcggtacgacatcacttccttaaagacaagattgga |
43060942 |
T |
|
| Q |
315 |
gttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggc |
414 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||| |||||||| |
|
|
| T |
43060941 |
gttattgatgatacctccatcttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaataacaatggttgtaatgatatcagtaaatgga |
43060842 |
T |
|
| Q |
415 |
aatcat |
420 |
Q |
| |
|
|||||| |
|
|
| T |
43060841 |
aatcat |
43060836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 489 - 547
Target Start/End: Complemental strand, 43060807 - 43060749
Alignment:
| Q |
489 |
tatatgtatatatggccacacaaatgttaacattttctattgacttgaatataacagaa |
547 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
43060807 |
tatatatatatattaccacacaaatgttaatattttctattgacttgaatacaacagaa |
43060749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 347 - 515
Target Start/End: Complemental strand, 448677 - 448506
Alignment:
| Q |
347 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggcaatcatatcccatagtaaatagccaatta |
443 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
|
| Q |
444 |
gtatagttgactgttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgt |
515 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
448577 |
gtatagttgactgttccatgatttgagcaatattcatcattgtattccatgtatatatggctacacaaatgt |
448506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
108 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
148 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 42019520 - 42019449
Alignment:
| Q |
294 |
ttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaa |
365 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||| | || |||||| || ||||||||| |||||| |
|
|
| T |
42019520 |
ttccttaaagacaagattggagttcttgaagataactccattttcagggggagtaaaggagtatttacttaa |
42019449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University