View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14746_high_6 (Length: 405)
Name: NF14746_high_6
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 2 - 389
Target Start/End: Original strand, 11592709 - 11593096
Alignment:
| Q |
2 |
cctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592709 |
cctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaa |
11592808 |
T |
|
| Q |
102 |
cattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattac |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
11592809 |
cattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcctttgctttctccatcac |
11592908 |
T |
|
| Q |
202 |
atgtttgcatttaccatatgcatcacaaataagctctttagcatctctagcattaggagtatgaagattataatgtgatgaagatgcatcatgtgaaatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11592909 |
atgtttgcatttaccatatgcatcacaaataagctctttagcatttttggcattaggagtatgaagattataatgtgatgaagatgcatcttgtgaaatt |
11593008 |
T |
|
| Q |
302 |
ccttgacccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaaccagaatccatgttggtgtaat |
389 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11593009 |
ccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttggtgtaat |
11593096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 2 - 389
Target Start/End: Complemental strand, 11645410 - 11645023
Alignment:
| Q |
2 |
cctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645410 |
cctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaa |
11645311 |
T |
|
| Q |
102 |
cattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
11645310 |
cattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcctttgctttctccatcac |
11645211 |
T |
|
| Q |
202 |
atgtttgcatttaccatatgcatcacaaataagctctttagcatctctagcattaggagtatgaagattataatgtgatgaagatgcatcatgtgaaatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11645210 |
atgtttgcatttaccatatgcatcacaaataagctctttagcatttttggcattaggagtatgaagattataatgtgatgaagatgcatcttgtgaaatt |
11645111 |
T |
|
| Q |
302 |
ccttgacccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaaccagaatccatgttggtgtaat |
389 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645110 |
ccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttggtgtaat |
11645023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 37180904 - 37180666
Alignment:
| Q |
2 |
cctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaa |
101 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
37180904 |
cctttttccaatgacccttttgtggaatcttgaacattatcataaacatcattagctttatcataaactttctctttaacattatcaactgcatcaacaa |
37180805 |
T |
|
| Q |
102 |
cattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcctttgctttctccattac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |
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| T |
37180804 |
cattgttaccaacttctttcactgcttctttgtttgcataaacaatatctctcttcttatcaattgtttatgaggctttatcctttgctttctccattgc |
37180705 |
T |
|
| Q |
202 |
atgtttgcatttaccatatgcatcacaaataagctcttt |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
37180704 |
gtgtttgcatttaccatatgcatcacaaataagctcttt |
37180666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 385
Target Start/End: Complemental strand, 31069361 - 31069260
Alignment:
| Q |
283 |
agatgcatcatgtgaaattccttgacccatgtttggtagaacagaagcagcttctttgattctatctttggtgttttctatgaaaccagaatccatgttg |
382 |
Q |
| |
|
||||| ||| ||||| ||||||||||| || ||||| ||||| |||||| |||||| ||| | |||| ||||||||||||||||| ||||| || ||| |
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| T |
31069361 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
31069263 |
T |
|
| Q |
383 |
gtg |
385 |
Q |
| |
|
||| |
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|
| T |
31069262 |
gtg |
31069260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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