View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14746_high_9 (Length: 332)
Name: NF14746_high_9
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 39028762 - 39029083
Alignment:
| Q |
1 |
cataggactatcatcaacaaccaaaaacttctttccacttaatggttcaggattgcttgattctcctccagattcttctatttcaccttgatgaacagaa |
100 |
Q |
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| T |
39028762 |
cataggactatcatcaacaaccaaaaacttctttccacttaatggttcaggattgcttgattctcctccagattcttctatttcaccttgatgaacagaa |
39028861 |
T |
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| Q |
101 |
ccttttcttcccattttaacatatgatttttgtgttcccttccagcattgtcccacacttagacacacactttcatcattggttggttcttgtgatctta |
200 |
Q |
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| T |
39028862 |
ccttttcttcccattttaacataggatttttgtgttcccttccagcattgtcccacacttagacacacactttcatcattggttggttcttgtgatctca |
39028961 |
T |
|
| Q |
201 |
attcatttcttggtttactagaactgcttatccaactaccaccaaactcaggaataagcttaataacttggaacaatctactaccatgaaatggttttga |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39028962 |
attcatttcttggtttactagaattgcttatccaactaccaccaaactcaggaagaagcttaataacttggaacaatctactaccatgaaatggttttga |
39029061 |
T |
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| Q |
301 |
tatcacaatatcatcttgatca |
322 |
Q |
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||||||| |||||||||||||| |
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| T |
39029062 |
tatcacattatcatcttgatca |
39029083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 40896023 - 40896099
Alignment:
| Q |
246 |
actcaggaataagcttaataacttggaacaatctactaccatgaaatggttttgatatcacaatatcatcttgatca |
322 |
Q |
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| T |
40896023 |
actcaggaagaagcattatgacttggaacaaacgactaccgtgaaatggtttcgatatgacaatgtcattttgatca |
40896099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 6996296 - 6996372
Alignment:
| Q |
246 |
actcaggaataagcttaataacttggaacaatctactaccatgaaatggttttgatatcacaatatcatcttgatca |
322 |
Q |
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||||||||| |||| | || ||||||||||| | |||||| ||||||||||| ||||| ||||| || | ||||||| |
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| T |
6996296 |
actcaggaagaagcattatgacttggaacaaacgactaccgtgaaatggtttcgatatgacaatgtcgttttgatca |
6996372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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