View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14746_low_11 (Length: 320)
Name: NF14746_low_11
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 40415469 - 40415785
Alignment:
| Q |
1 |
gaaatgaatgtgattgatcgtaacatgtgtgtcatagtcgtctcggtgttagacattgacaacaaatttaacctgaaatgtcagtgctacttggatataa |
100 |
Q |
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| T |
40415469 |
gaaatgaatgtgattgatcgtaacatgtgtgtcacagtcgtctcggtgttagacattgacaacaaatttaacctgaaatgtcagtgttacttgggtataa |
40415568 |
T |
|
| Q |
101 |
actgttgccccacgtaccatagtgagtatggagtcatcaattttggaggcacgctgcctccaaatagagctgtttcttgtgccatcttcaacagaacgtg |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40415569 |
actgttgccccacgtaccttagtgagtatggagtcatcaattttggaggcacgctgcctccaaatagggctgtttcttgtgccatcttcaacagaacgtg |
40415668 |
T |
|
| Q |
201 |
tctcaaaatttctcctaaatacattcctgaaataagcttttcaaaaatctaagagaaaagggaagg-nnnnnnnnnnttcagggatcaattctagatatc |
299 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
40415669 |
tctcacaatttctcctaaatacattcctgaaataagcttttcaaaaatctaagagaaaaaggaaggaaaaaaaaaaattcagggatcaattctagatatc |
40415768 |
T |
|
| Q |
300 |
gagataaattatcaata |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
40415769 |
aagataaattatcaata |
40415785 |
T |
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