View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14746_low_12 (Length: 318)
Name: NF14746_low_12
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 13692918 - 13692799
Alignment:
| Q |
18 |
gaataaacagttatgagtgtaacctttactcctttctctatcaaacgctttgagaattgaatcataggattcatatgtccttgtgctggataaggtaaga |
117 |
Q |
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| T |
13692918 |
gaataaacagttatcaatgtaacctttactcctttctctatcaaacgctttgagaattgaatcataggattcatatgtccttgtgctggataaggtaaga |
13692819 |
T |
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| Q |
118 |
tcagacagtgagctacatgg |
137 |
Q |
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| T |
13692818 |
tcagacagtgagctacatgg |
13692799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 13686448 - 13686346
Alignment:
| Q |
27 |
gttatgagtgtaacctttactcctttctctatcaaacgctttgagaattgaatcataggattcatatgtccttgtgctggataaggtaagatcagacagt |
126 |
Q |
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| T |
13686448 |
gttattagtgttatctttactcctttctctattaaacgttttgagaattgaatcatagggttcatgtggccttgtgctggataaggtaagatgagacagt |
13686349 |
T |
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| Q |
127 |
gag |
129 |
Q |
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||| |
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| T |
13686348 |
gag |
13686346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 13673473 - 13673575
Alignment:
| Q |
33 |
agtgtaacctttactcctttctctatcaaacgctttgagaattgaatcataggattcatatgtccttgtgctggataaggtaagatcagacagtgagcta |
132 |
Q |
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| T |
13673473 |
agtgtaacttttactcctttatggatcaaacgttttgagaattgaatcataggattcatgtgaccttgacctggaaaaggtaagatcagacagtgagcta |
13673572 |
T |
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| Q |
133 |
cat |
135 |
Q |
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||| |
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| T |
13673573 |
cat |
13673575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 13692759 - 13692644
Alignment:
| Q |
177 |
ttcctaacaaaatacatctatgcactttagttacatatacatatacctacggaaaccaaacaattgtgcttggacatagtg--ccttgtttgtaaaaaat |
274 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||| | | ||| |||||||||| ||||||||| |||| || ||| ||||||||| |
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| T |
13692759 |
ttcctaataaaatacatctatgtactttagttacatatacatatacatccacaaaacaaacaattgcgcttggacacagtggctctggttagtaaaaaat |
13692660 |
T |
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| Q |
275 |
agcagataattgataa |
290 |
Q |
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||| |||||||||||| |
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| T |
13692659 |
agcggataattgataa |
13692644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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