View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14746_low_13 (Length: 290)
Name: NF14746_low_13
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 5176242 - 5176518
Alignment:
| Q |
2 |
tgtaacactatataattaaaaggattaataggactaaattaaaattctgtcttcctaaaaatgcatgcaaaataaggagatcagacggttcatattacac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5176242 |
tgtaacactatataattaaaaggattaataggattaaattaaaattctgtcttcctaaaaatgcatgcaaaataaggagatcagacggttcatattacac |
5176341 |
T |
|
| Q |
102 |
tataacaaaatcagtttaaaactgtctcgttcgttaagtctatatcaggaaaaactgcgtgatgaagttactacgcctaatccaaatccgtatgaaacaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5176342 |
tataacaaaatcagtttaaaactgtctcgttcgttaagtctatatcaggaaaaactgcgtgatgaagttactacgcctaatccaaatccgtacgaaacaa |
5176441 |
T |
|
| Q |
202 |
aattgattatgcatcggtccacgcagcaaaaacagacagtggcatctgaggcaaagaaaatgaagacattattgatg |
278 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5176442 |
aactgattatgcatcggtccacgcagcaaaaacagacagtggcatctgaggcaaagaaaatgaagacattattgatg |
5176518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University