View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14746_low_15 (Length: 263)
Name: NF14746_low_15
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 32617333 - 32617178
Alignment:
| Q |
10 |
tcaaggatccaattaaaaacttttttagtttaaagacctaattataaattgtttataattttaagaacttaatttttgatcg--ttataaaacctattta |
107 |
Q |
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| T |
32617333 |
tcaaggatccaattaaaaacatttttagtttaaagacctacttataaattattgataattttaagaacttaattttttttagagttataagacctattta |
32617234 |
T |
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| Q |
108 |
aagatattcaaataatttagggatcctcaaagta--tttaaaccatggataaaata |
161 |
Q |
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| T |
32617233 |
aagatcttcaaataatttagggatcctcatagtatttttaaaccaaggataaaata |
32617178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32636218 - 32636180
Alignment:
| Q |
1 |
tataaacaatcaaggatccaattaaaaacttttttagtt |
39 |
Q |
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| T |
32636218 |
tataaacaatcaaggatccaattaaaaacatttttagtt |
32636180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 32636184 - 32636143
Alignment:
| Q |
205 |
tagttatgtccactaataaacaatgtatttgttattttcatc |
246 |
Q |
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| T |
32636184 |
tagttatttccactgataaacaatgtatttgttattttcatc |
32636143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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