View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14746_low_2 (Length: 534)
Name: NF14746_low_2
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 100 - 294
Target Start/End: Complemental strand, 33272772 - 33272578
Alignment:
| Q |
100 |
aaggggattgcttatactttattgttagttattgtagaatatttgttgataaatacattcaaagtttgagttaaatatatatgattatattgtagaccaa |
199 |
Q |
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| T |
33272772 |
aaggggattgcttatactttattgttagttattgtagaatatttgttgataaatacattcaaagtttgagttaaatatatatgattatattgtagaccaa |
33272673 |
T |
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| Q |
200 |
gtagcttagatatagaaaggaatttaatatgctatgcatgacaatccctaaaattaaagaacgatgcatgacattattcaatagagctctcgaat |
294 |
Q |
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| T |
33272672 |
gtagcttagatatagaaaggaatttaatatgctatgcatgacaatccctaaaattaaagatcgatgcatgacattattcaatagagctctcgaat |
33272578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 414 - 522
Target Start/End: Complemental strand, 33272574 - 33272466
Alignment:
| Q |
414 |
taaaaatttaactttgtaacctcaatagatgagttcaattctcatgtgagacggttgtaaaatgatcattgatatcaccattattaatattgatttttat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33272574 |
taaaaatttaactttgtaacctcaatagatgagttcaattttcatgtgagacggttgtaaaatgatcattgatatcaccattattaatattgatttttat |
33272475 |
T |
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| Q |
514 |
ttgccaatt |
522 |
Q |
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| T |
33272474 |
ttgccaatt |
33272466 |
T |
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