View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14746_low_4 (Length: 471)
Name: NF14746_low_4
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 3 - 454
Target Start/End: Complemental strand, 42923288 - 42922843
Alignment:
| Q |
3 |
atatgaatggggcaggagggtaaaccaattaaaggatacctcactcgggagatagtaatatgatatgatatattaattaatgtgaaaatatgatagatta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42923288 |
atatgaatggggcaggagggtaaaccaattaaaggatacctcactcgggtgatagtaatatgatatgatatattaat----gtgaaaatatgatagatta |
42923193 |
T |
|
| Q |
103 |
tgaggagacctggattggtggggatgcatagttgtataacttgttattataagataagatagctcttcacgagccttgtgataaaaggtccagatagccg |
202 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42923192 |
tgaggagacatggataggtggggatgcatagttgtataacttgttattataagataagatagctcttcacgagccttgtgataaaaggtccagagagccg |
42923093 |
T |
|
| Q |
203 |
atggagacctttgagggagagacacataactaggaattgactaactgacttgtactcagccagaagaaatnnnnnnnnnnnnnnnnntgtaagttctctt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42923092 |
atggagacctttgagggagagacacataactaggaattgactaactgacttgtactcagccagaagaaat-aaaaaaattaaaaaaatgtaagttctctt |
42922994 |
T |
|
| Q |
303 |
tcattattaattacttcgtttcatagtctcgtatttaatggggggttttgggtgctttctgaacctccaaacattagtcacattcnnnnnnntaattgtt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42922993 |
tcattattaattacttcgtttcatagtctcgtatttaat-gggggttttgggtgctttctgaacctccaaacattagtcacattcaaaaaaataattgtt |
42922895 |
T |
|
| Q |
403 |
gtatttcttctattctgcagtcaattcatgtgtttgttaagatctggtatat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42922894 |
gtatttcttctattctgcagtcaattcatgtgtttgttaagatctggtatat |
42922843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University