View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14746_low_5 (Length: 434)

Name: NF14746_low_5
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14746_low_5
NF14746_low_5
[»] chr7 (7 HSPs)
chr7 (15-428)||(40230950-40231361)
chr7 (332-428)||(33540035-33540131)
chr7 (327-428)||(38190203-38190303)
chr7 (320-428)||(19468253-19468361)
chr7 (320-428)||(39608201-39608311)
chr7 (320-427)||(22317608-22317717)
chr7 (348-428)||(44767282-44767358)
[»] chr2 (5 HSPs)
chr2 (320-428)||(2104147-2104253)
chr2 (326-428)||(5868914-5869017)
chr2 (391-428)||(26290481-26290518)
chr2 (321-428)||(18242074-18242182)
chr2 (391-428)||(30707099-30707136)
[»] chr6 (6 HSPs)
chr6 (320-428)||(1112422-1112531)
chr6 (326-422)||(26497786-26497883)
chr6 (320-420)||(3361976-3362077)
chr6 (338-428)||(7201168-7201257)
chr6 (355-428)||(609581-609654)
chr6 (322-428)||(1522667-1522774)
[»] chr5 (2 HSPs)
chr5 (338-428)||(27246280-27246369)
chr5 (322-428)||(11245447-11245553)
[»] chr4 (7 HSPs)
chr4 (315-428)||(6086973-6087084)
chr4 (320-428)||(16061380-16061488)
chr4 (328-420)||(6166446-6166537)
chr4 (320-428)||(18886230-18886338)
chr4 (391-428)||(32727973-32728010)
chr4 (391-428)||(6132014-6132051)
chr4 (371-428)||(38138822-38138879)
[»] chr1 (5 HSPs)
chr1 (320-428)||(7380303-7380410)
chr1 (345-428)||(50509849-50509931)
chr1 (391-428)||(24892009-24892046)
chr1 (391-428)||(26687692-26687729)
chr1 (391-428)||(23688381-23688418)
[»] chr3 (2 HSPs)
chr3 (332-422)||(42624825-42624913)
chr3 (338-428)||(54561164-54561252)
[»] chr8 (4 HSPs)
chr8 (328-428)||(21466818-21466923)
chr8 (338-428)||(13751387-13751478)
chr8 (338-428)||(44004266-44004354)
chr8 (391-428)||(9946777-9946814)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Complemental strand, 40231361 - 40230950
Alignment:
Q  15 atatattggtcgtaatctgaaataaagtgatatatatatagtgtatttaagagtttaggaatggaccaatggcatccttacattataattttcagacaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  40231361 atatattggtcgtaatctgaaataaagtgatatatata--gtgtatttaagagtttaggaatggacaaatggtatccttacattataattttcagacaaa 40231264  T
Q  115 tcagtatattttattttccaactggatcagataaaagtcacttcatacagacttagctcaagcatatggtaagtggttattttcacagtgatattgtaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40231263 tcagtatattttattttccaactggatcagataaaagtcacttcatacagacttagctcaagcatatggtaagtggttattttcacagtgatattgtaca 40231164  T
Q  215 aattaaccagttctaggtgtcatagtttaagcttaaaagaatccgagggtgataattcattgccatacaggggagatagcttaattatattgtcttcatt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  40231163 aattaaccagttctaggtgtcatagtttaagcttaaaagaatccgagggtgataattcattgccatataggggagatagcttaattatattgtcttcatc 40231064  T
Q  315 atagagccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatt 414  Q
    |||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  40231063 atagagccgttcctatgaaactagaggctcgactctcatagtaaaaataagcacttaataaaaaacattcacaatatttttaaaagattaatcttctatt 40230964  T
Q  415 taaattgagaataa 428  Q
    ||||||||||||||    
T  40230963 taaattgagaataa 40230950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 33540035 - 33540131
Alignment:
Q  332 aaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcac-agtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    ||||| |||||| |||||||||||||||||||||  | |||||||||| || ||| | | |||||||||||||||||||||||||||||||| |||||    
T  33540035 aaattggaggctcggctctcatagtaaaaataagcccctaataaaaaa-acgcacaattttttttaaaagattaatcttctatttaaattgaaaataa 33540131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 428
Target Start/End: Original strand, 38190203 - 38190303
Alignment:
Q  327 ctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaat 426  Q
    |||||||||| |||||||| |||||| |||||||||| |    |||||||||| || |||| | |||||||||||||||| ||||||||||||||| |||    
T  38190203 ctatgaaattggaggcttgactctcagagtaaaaataggcctctaataaaaaa-acacacaatttttttaaaagattaatattctatttaaattgaaaat 38190301  T
Q  427 aa 428  Q
    ||    
T  38190302 aa 38190303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 19468253 - 19468361
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaat 419  Q
    ||||| ||||| ||||  |||||| | |||||||||||||||||||   ||||||| ||| |  |||| | ||||||||||||||||||| |||||||||    
T  19468253 gccgtccctataaaatcggaggctcgactctcatagtaaaaataagcctttaataataaaaatgcacaatttttttaaaagattaatcttttatttaaat 19468352  T
Q  420 tgagaataa 428  Q
    ||| |||||    
T  19468353 tgaaaataa 19468361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 39608311 - 39608201
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtattttt--aaaagattaatcttctatttaa 417  Q
    ||||| ||||| ||| | |||||| ||||||| ||||||||||| |  | |||||||||| || |||| | |||||  || |||||||||||||||||||    
T  39608311 gccgtccctataaaactggaggctcggctctcgtagtaaaaataggctcctaataaaaaaaacgcacaatttttttttaagagattaatcttctatttaa 39608212  T
Q  418 attgagaataa 428  Q
    ||||| |||||    
T  39608211 attgaaaataa 39608201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 427
Target Start/End: Original strand, 22317608 - 22317717
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcaca--gtatttttaaaagattaatcttctatttaa 417  Q
    ||||| ||||||||| | ||||||||  |||||||||||||||| |  | |||||||||| ||  |||   | ||||||||||||| |||||||||||||    
T  22317608 gccgtccctatgaaactggaggcttgattctcatagtaaaaataggcccctaataaaaaaaacgtacaatttttttttaaaagattcatcttctatttaa 22317707  T
Q  418 attgagaata 427  Q
    ||||| ||||    
T  22317708 attgaaaata 22317717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 44767282 - 44767358
Alignment:
Q  348 tctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||||||||||| | || ||||||||||    | |||| | |||||| ||||||||||||||||||||||||| |||||    
T  44767282 tctcatagtaaaaacaggtccttaataaaa----cgcacaatttttttataagattaatcttctatttaaattgaaaataa 44767358  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 2104253 - 2104147
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaat 419  Q
    ||||| ||||||||| |||||||| ||||||||| |||||||||||  |||||||||||| || || | | |||||||||||||||||||||||||||||    
T  2104253 gccgtccctatgaaactagaggctcggctctcatggtaaaaataagcccttaataaaaaa-ac-cataatttttttaaaagattaatcttctatttaaat 2104156  T
Q  420 tgagaataa 428  Q
    ||| |||||    
T  2104155 tgaaaataa 2104147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 5868914 - 5869017
Alignment:
Q  326 cctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaaca-ctcacagtatttttaaaagattaatcttctatttaaattgaga 424  Q
    ||||| ||| |||||||| ||||||| ||||||||||| |  | | |||||||| | | |||| | |||||||||||||||||||||||||||||||| |    
T  5868914 cctataaaactagaggctcggctctcgtagtaaaaataggcccctgataaaaaaaaacgcacaatttttttaaaagattaatcttctatttaaattgaaa 5869013  T
Q  425 ataa 428  Q
    ||||    
T  5869014 ataa 5869017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 26290518 - 26290481
Alignment:
Q  391 tttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||||||||||||||||||||||||||||| |||||    
T  26290518 tttttaaaagattaatcttctatttaaattgaaaataa 26290481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 428
Target Start/End: Original strand, 18242074 - 18242182
Alignment:
Q  321 ccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcac-agtatttttaaaagattaatcttctatttaaat 419  Q
    |||| ||||| ||| | |||||||||||||| ||||||||||| ||   |||||||||| |   || | | |||||||||||||||||||||||||||||    
T  18242074 ccgtccctataaaactggaggcttggctctcgtagtaaaaataggtctctaataaaaaaaatatacaattttttttaaaagattaatcttctatttaaat 18242173  T
Q  420 tgagaataa 428  Q
     || |||||    
T  18242174 cgaaaataa 18242182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 30707136 - 30707099
Alignment:
Q  391 tttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  30707136 tttttaaaagattaattttctatttaaattgaaaataa 30707099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 1112422 - 1112531
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacact-cacagtatttttaaaagattaatcttctatttaaa 418  Q
    ||||||||||| ||| | |||||| | ||||| ||||||||||| ||  ||||||||||| | | |||| | ||||||||||||||||||||||||||||    
T  1112422 gccgttcctataaaactggaggctcgactctcgtagtaaaaataggtctttaataaaaaaaaatacacaatttttttaaaagattaatcttctatttaaa 1112521  T
Q  419 ttgagaataa 428  Q
    |||| |||||    
T  1112522 ttgaaaataa 1112531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 422
Target Start/End: Original strand, 26497786 - 26497883
Alignment:
Q  326 cctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaaca-ctcacagtatttttaaaagattaatcttctatttaaattga 422  Q
    ||||||||| |||||||| |||||||||||||||||||    | |||||||||| | |  ||| | ||||||||||||||||||||||||||||||||    
T  26497786 cctatgaaactagaggctcggctctcatagtaaaaatagacccctaataaaaaaaagcgtacaatttttttaaaagattaatcttctatttaaattga 26497883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 420
Target Start/End: Complemental strand, 3362077 - 3361976
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtattttt-aaaagattaatcttctatttaaa 418  Q
    ||||| |||||||||   |||| | |||||||||||||||| ||||| | |||||||||| || |||| | ||||| |||||| ||||||||||||||||    
T  3362077 gccgtccctatgaaaccggaggttaggctctcatagtaaaactaagtccataataaaaaaaacgcacaattttttttaaaagactaatcttctatttaaa 3361978  T
Q  419 tt 420  Q
    ||    
T  3361977 tt 3361976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 7201257 - 7201168
Alignment:
Q  338 gaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||| | |||||||| |||||||| ||   ||||||| || || |||| | |||||||||||||||||||||||||||||||| |||||    
T  7201257 gaggctcgactctcataataaaaatacgtctataataaataaaacgcacaat-tttttaaaagattaatcttctatttaaattgaaaataa 7201168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 609581 - 609654
Alignment:
Q  355 gtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    ||||||||| |  |||||||||||| || |||| | |||||||||| ||||||||||||||| ||||| |||||    
T  609581 gtaaaaataggcccttaataaaaaaaacgcacaatttttttaaaaggttaatcttctatttatattgaaaataa 609654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 1522774 - 1522667
Alignment:
Q  322 cgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaa-agattaatcttctatttaaatt 420  Q
    ||||| ||| ||||| ||||||  |||||||||| ||||||| ||   ||||||||||  | |||| | ||||| || ||||||||||||||||||||||    
T  1522774 cgttcttataaaattggaggctcagctctcataggaaaaataggtttctaataaaaaaagcgcacaattttttttaagagattaatcttctatttaaatt 1522675  T
Q  421 gagaataa 428  Q
    || |||||    
T  1522674 gaaaataa 1522667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 27246369 - 27246280
Alignment:
Q  338 gaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||| | |||| |||||||||||||  ||||||||||||| || |||| | |||||||||||||||| ||||||||||||||| |||||    
T  27246369 gaggctcgactctaatagtaaaaataaacacttaataaaaaaaacgcacaat-tttttaaaagattaattttctatttaaattgaaaataa 27246280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 11245553 - 11245447
Alignment:
Q  322 cgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattg 421  Q
    ||||||||||||||| |||| |  |||||||||||||||||  |    || ||||||| || |||| | |||| ||||||||||||||||||||||||||    
T  11245553 cgttcctatgaaattggaggttcagctctcatagtaaaaattggcctctagtaaaaaaaacacacaattttttcaaaagattaatcttctatttaaattg 11245454  T
Q  422 agaataa 428  Q
    | |||||    
T  11245453 aaaataa 11245447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 428
Target Start/End: Original strand, 6086973 - 6087084
Alignment:
Q  315 atagagccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatt 414  Q
    |||||||||||||||| ||| | |||||| ||||||| ||||||||||| || | ||||||||||  | |||| | ||||||||| ||||||||| ||||    
T  6086973 atagagccgttcctataaaactggaggctcggctctcgtagtaaaaataggtccctaataaaaaa-gcgcacaat-tttttaaaatattaatcttatatt 6087070  T
Q  415 taaattgagaataa 428  Q
    |||||||| |||||    
T  6087071 taaattgaaaataa 6087084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 16061380 - 16061488
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaat 419  Q
    ||||| ||||| ||| | |||||| ||||||| ||||||||||| |    |||||||||| || |||| | |||||||||||| ||||||||||||||||    
T  16061380 gccgtccctataaaactggaggctcggctctcgtagtaaaaataggcctctaataaaaaaaacgcacaatttttttaaaagatcaatcttctatttaaat 16061479  T
Q  420 tgagaataa 428  Q
    ||| |||||    
T  16061480 tgaaaataa 16061488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 420
Target Start/End: Complemental strand, 6166537 - 6166446
Alignment:
Q  328 tatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaatt 420  Q
    ||||||||| ||||||||| ||| |||||||||||| |    |||||||||| || | || | ||||||||||||||||||||||||||||||    
T  6166537 tatgaaattggaggcttggttcttatagtaaaaataggcttctaataaaaaa-acactcaatgtttttaaaagattaatcttctatttaaatt 6166446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 18886338 - 18886230
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaat 419  Q
    ||||| ||||| ||| |||||||| | ||||  |||||||||||  | | ||||||||||  |  ||| | |||||||||||||||||||||||||||||    
T  18886338 gccgtccctataaaactagaggctcgactcttgtagtaaaaatagatccctaataaaaaaagcgtacaatttttttaaaagattaatcttctatttaaat 18886239  T
Q  420 tgagaataa 428  Q
    ||| |||||    
T  18886238 tgaaaataa 18886230  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 32727973 - 32728010
Alignment:
Q  391 tttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||||||||||||||||||||||||||||| |||||    
T  32727973 tttttaaaagattaatcttctatttaaattgaaaataa 32728010  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 6132051 - 6132014
Alignment:
Q  391 tttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  6132051 ttttaaaaagattaatcttctatttaaattgaaaataa 6132014  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 38138879 - 38138822
Alignment:
Q  371 aataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    ||||||||| || |||| | |||||||||||||||| || |||||||||||| |||||    
T  38138879 aataaaaaaaacgcacaatttttttaaaagattaatattttatttaaattgaaaataa 38138822  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 7380303 - 7380410
Alignment:
Q  320 gccgttcctatgaaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaat 419  Q
    ||||| ||||| ||||| |||||| | ||||| ||||||||||| |  | |||||||||| |  |||| | |||||||||||||||||||||||||||||    
T  7380303 gccgtccctataaaattggaggctcgtctctcgtagtaaaaataggcccctaataaaaaa-atgcacaatttttttaaaagattaatcttctatttaaat 7380401  T
Q  420 tgagaataa 428  Q
    ||| |||||    
T  7380402 tgaaaataa 7380410  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 428
Target Start/End: Complemental strand, 50509931 - 50509849
Alignment:
Q  345 ggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    ||||||||||||||||||| |  | ||||||||||  | |||| | |||||||||||||||| ||||||||||||||| |||||    
T  50509931 ggctctcatagtaaaaataggcccctaataaaaaaatc-cacaatttttttaaaagattaattttctatttaaattgaaaataa 50509849  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 24892009 - 24892046
Alignment:
Q  391 tttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||||||||||||||||||||||||||||| |||||    
T  24892009 tttttaaaagattaatcttctatttaaattgaaaataa 24892046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 26687692 - 26687729
Alignment:
Q  391 tttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||||||||||||||||||||||||||||| |||||    
T  26687692 tttttaaaagattaatcttctatttaaattgaaaataa 26687729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 23688381 - 23688418
Alignment:
Q  391 tttttaaaagattaatcttctatttaaattgagaataa 428  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  23688381 tttttaaaagaataatcttctatttaaattgaaaataa 23688418  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 422
Target Start/End: Complemental strand, 42624913 - 42624825
Alignment:
Q  332 aaattagaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattga 422  Q
    |||||||||||||||||||| |||| |||||| ||  ||||||||||| |  || | | ||||||||||||||||||||||||||||||||    
T  42624913 aaattagaggcttggctctcgtagttaaaataggtttttaataaaaaa-atgcataat-tttttaaaagattaatcttctatttaaattga 42624825  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 54561252 - 54561164
Alignment:
Q  338 gaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||| ||||||||| |||||||||  |  ||||||||||| |  |||| | ||||| |||||||||||||||||||||||||| |||||    
T  54561252 gaggctcggctctcattgtaaaaatagttctttaataaaaaa-atgcacaat-ttttttaaagattaatcttctatttaaattgaaaataa 54561164  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 428
Target Start/End: Original strand, 21466818 - 21466923
Alignment:
Q  328 tatgaaattagaggcttggctctcatagtaaaaataagtacttaat-----aaaaaacactcacagtatttttaaaagattaatcttctatttaaattga 422  Q
    ||||||| | |||||||||||||||||||||||||| |  ||||||     |||||| || |||| | ||||||||||||||||||||| |||| |||||    
T  21466818 tatgaaactggaggcttggctctcatagtaaaaataggcccttaataaaaaaaaaaaaacgcacaatttttttaaaagattaatcttctgtttatattga 21466917  T
Q  423 gaataa 428  Q
     |||||    
T  21466918 aaataa 21466923  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 13751387 - 13751478
Alignment:
Q  338 gaggcttggctctcatagtaaaaataagtacttaataaaaaaca-ctcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||||| ||||||||||||||||| |  | || ||||||| | | |||| | |||| ||||||||||||||||||||||||||| |||||    
T  13751387 gaggcttgactctcatagtaaaaataggctcctagtaaaaaaaaacgcacaattttttgaaaagattaatcttctatttaaattgaaaataa 13751478  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 428
Target Start/End: Original strand, 44004266 - 44004354
Alignment:
Q  338 gaggcttggctctcatagtaaaaataagtacttaataaaaaacactcacagtatttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||| ||||||||||||||||| |  | | |||||||||| || |||| | |||||||||||| ||||||||||||||||||| |||||    
T  44004266 gaggctcggctctcatagtaaaaacagatccctaataaaaaa-ac-cacaatttttttaaaagataaatcttctatttaaattgaaaataa 44004354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 9946814 - 9946777
Alignment:
Q  391 tttttaaaagattaatcttctatttaaattgagaataa 428  Q
    |||||||||||||||||||||||||||||||| |||||    
T  9946814 tttttaaaagattaatcttctatttaaattgaaaataa 9946777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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