View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14746_low_8 (Length: 387)
Name: NF14746_low_8
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 223 - 373
Target Start/End: Original strand, 16832835 - 16832985
Alignment:
| Q |
223 |
ggtcagaggccttgttaaacatgggatagaaactatatataagtccttttcttatcgcatcaactttcttctcaacgacacaagaatgatcctttagcag |
322 |
Q |
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| T |
16832835 |
ggtcagaggccttgttaaacatgagatagaaacaatatatacatccttttcttatcgcatcaactttcttctcaacgacacaagaatgatcctttagcag |
16832934 |
T |
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| Q |
323 |
ggattaatgattgattgaccttgtaataaaaatttacactgacagaatatt |
373 |
Q |
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| T |
16832935 |
ggattaatgattgattgaccttgtaataaaaatttacactgacagaatatt |
16832985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 16832624 - 16832771
Alignment:
| Q |
12 |
agaatatgaagacgggttaaggttagggccagggtcacctgccaacttaaatgaattaatgcgagtctttgattatgcattatgcttatagtacatggga |
111 |
Q |
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| T |
16832624 |
agaaaatgaagacgggttaaggttagggccagggtcacctgcaaactgaaatgaattaatgcgagtctttgattatgcattatgcttatagtacttggga |
16832723 |
T |
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| Q |
112 |
aatactcaactaaaatacatataacaaaagtttttatgtgattagaat |
159 |
Q |
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| T |
16832724 |
aatactcaactaaaatacatataacaaaagtttttatgtgattagaat |
16832771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 16573400 - 16573345
Alignment:
| Q |
84 |
ttatgcattatgcttatagtacatgggaaatactcaact-aaaatacatataacaaaa |
140 |
Q |
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| T |
16573400 |
ttatgcattgtgctta--gtacttgggaaatactcaactgaaaatacatataacaaaa |
16573345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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