View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14746_low_9 (Length: 340)
Name: NF14746_low_9
Description: NF14746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14746_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 6310148 - 6309845
Alignment:
| Q |
18 |
acattcggtaaaggagggaatgtgaagatgattaaggtaaggtactttgtcatt----gattcttggtctgtttataatgttgttattggcttgcctgct |
113 |
Q |
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| T |
6310148 |
acattcggtaaaggagggaatgtgaagatgattaaggtaaggtactttgtcattaattgattcttggtctgtttataatgttgttattggcttgcctgct |
6310049 |
T |
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| Q |
114 |
gttgctgatttgggagcggtgatctcaacgttacacctcacaatgaaatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatgg |
213 |
Q |
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| T |
6310048 |
gttgctgatttgggagcggtgatctcaacgttacacctcacaatgaaatatcctattggagatggaatggtcggacttgtcaaggcagacctcgagatgg |
6309949 |
T |
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| Q |
214 |
agaaaaagtgttatgagatgtgccctacggctatttaggtgtttctttcaattttcaacaac-taagaaaaactgtcttatatatgttaggagtagtatg |
312 |
Q |
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| T |
6309948 |
cgaaaaagtgttatgagatgtgccctacggctatttaggtgtttctttcaattttcaacaacttaagaaaaaatgtcttatatatgttaggagtagtatg |
6309849 |
T |
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| Q |
313 |
ttta |
316 |
Q |
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|||| |
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| T |
6309848 |
ttta |
6309845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 270
Target Start/End: Complemental strand, 6323754 - 6323564
Alignment:
| Q |
85 |
tttataatgttgttattggcttgcctgctgttgctgatttgggagcggtgatctcaacgttacacctcacaatgaaatatcctattggagatggaatggt |
184 |
Q |
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| T |
6323754 |
tttataatgttgttattggcaggctgacagttgctgatttgagagatgtgatctcaaccctacacctcaccatgaaatatcctgccggagatggaatggt |
6323655 |
T |
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| Q |
185 |
cggagttgtcaaggcagacctcgagatggagaaaaagtgttatgagatgtgccctacggct-----atttaggtgtttctttcaattttca |
270 |
Q |
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| T |
6323654 |
cggagttgtcaaggcagacttggatatggccaaaaattgttaggatatgtgccccatggctttttaatttaggtgtttctttcgattttca |
6323564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 6327015 - 6326962
Alignment:
| Q |
160 |
aatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatgg |
213 |
Q |
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| T |
6327015 |
aatatcctgttggagatggaaaggtcggtgttgtcgaggcagacctcgagatgg |
6326962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 6330015 - 6329939
Alignment:
| Q |
150 |
ctcacaatgaaatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatggagaaaaagtgtta |
226 |
Q |
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| T |
6330015 |
ctcaccatgaaatatcctcttggagatggaaaggttggagttgttagggcagatcttgagatggctaagaagtgtta |
6329939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 6330140 - 6330064
Alignment:
| Q |
27 |
aaaggagggaatgtgaagatgattaaggtaaggtactttgtcattgattcttggtctgtttataatgttgttattgg |
103 |
Q |
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| T |
6330140 |
aaaggtgggaatgccaagatgatcaaggtgaggtacttggtcgttgattcacactctatttataatgttgttattgg |
6330064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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