View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14747_high_6 (Length: 364)
Name: NF14747_high_6
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14747_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 47502535 - 47502177
Alignment:
| Q |
1 |
ctatatttgtattgattagtgaagattggggaca------------ttatgattgtgtgtacctgcggcaggtgtaatgcaaacaagaccagtgatcatg |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47502535 |
ctatatttgtattgattagtgaagattggggacaaagtatgtgacattatgattgtgtgtacctgcggcaggtgtaatgcaaacaagaccagtgatcatg |
47502436 |
T |
|
| Q |
89 |
ccctgtacggcgccaaacacagtaggcttgccaaagtagaaggtatcaagcatgacccataccatgatgctagcagcagtacacacgtgtgtgttaagga |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47502435 |
ccctgtacggcgccaaacacagtaggcttgccaaagtagaaggtatcaagcatgacccataccgtgatgctagcagcagtacacacgtgtgtgttaagga |
47502336 |
T |
|
| Q |
189 |
tagcaagagatgcaatggtactagccacaaatggagctccaccgttgaatccactccaacccatccaaagcagtcctgcgcctgcaagcaccattatcat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47502335 |
tagcaagagatgcaatggtactagccacaaatggagctccaccgttgaatccactccaacccatccaaagcagtcctgcgcctgcaagcaccattatcat |
47502236 |
T |
|
| Q |
289 |
gttatttgttgctgctggaaatgtttccctgtccttgtctgctcgaggacccacctatt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47502235 |
gttatttgttgctgctggaaatgtttccctgtccttgtctgctcgaggacccacctatt |
47502177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 7963627 - 7963714
Alignment:
| Q |
120 |
caaagtagaaggtatcaagcatgacccataccatgatgctagcagcagtacacacgtgtgtgttaaggatagcaagagatgcaatggt |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
7963627 |
caaagtagaaggtatccagcatgacccataccatgatgctagcagcagtacacacgtgtgttgttaggacagcaagagatgcaatggt |
7963714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 33058338 - 33058425
Alignment:
| Q |
120 |
caaagtagaaggtatcaagcatgacccataccatgatgctagcagcagtacacacgtgtgtgttaaggatagcaagagatgcaatggt |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||| |||| |||| | |||| |||||||||| ||||||| |
|
|
| T |
33058338 |
caaagtagaaggtatccagcatgacccataccatgatgctagcagtagtacatacgtttgtggttaggacagcaagagatacaatggt |
33058425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University