View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14747_low_1 (Length: 825)
Name: NF14747_low_1
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14747_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 6e-64; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 129 - 355
Target Start/End: Original strand, 12369527 - 12369751
Alignment:
| Q |
129 |
gatgcaatgatataaatgaacaggcaattggaattgaaactagagcaacatccacaatgtaataattggaatccagatataatacgtagcaacaagataa |
228 |
Q |
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| T |
12369527 |
gatgcaatgatataaatgaaaaggcaattggaattgaaactagaggcacaaccac----taataattgaaatccagatataacacgtagcagcaagagaa |
12369622 |
T |
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| Q |
229 |
ttaattgaatttggatgaataatataaaa--aacaaaacgccaattgaaatcaaaatgagttcgttacgtttgactcaagtttaaaagcagagttatgaa |
326 |
Q |
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| T |
12369623 |
ttaattgagtttggatgaataataaaaaaaaaacaaaatggcaattgaaatcaaaatgagttatttacggttgaatgaagtttaaaagcaaagttatgaa |
12369722 |
T |
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| Q |
327 |
tccaattcaatatgaatagtggatcgatg |
355 |
Q |
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| T |
12369723 |
tccaattcaatatgaatagtggaccgatg |
12369751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 41829183 - 41829292
Alignment:
| Q |
17 |
aattgaaagaatagccacgacaacagctaattgtgattaaagaagccccctgcaaacatgtaaacggaagtacactcagcaaaaggggatttcatacaaa |
116 |
Q |
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| T |
41829183 |
aattgaaagaatagccacgacaacagctaattgtgattaaagaagccccctgcaaacaagtaaacggaagtacgcgcagcaaaaggggatttcatacaaa |
41829282 |
T |
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| Q |
117 |
cacacaagcc |
126 |
Q |
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| T |
41829283 |
cacacaagcc |
41829292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 715 - 812
Target Start/End: Original strand, 12370058 - 12370155
Alignment:
| Q |
715 |
tgtgataacactgcttgaattggggaggaagcaagcaaacgcctttgacaggatttggctgtgcagcttgcatttgcattgggacaattttggatatt |
812 |
Q |
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| T |
12370058 |
tgtgataacactgcttgaattggggaggaagcaagcaaacacgtttgacaggatttggctgtacagcttgcatttggattgggacaattttggatatt |
12370155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 12369393 - 12369500
Alignment:
| Q |
17 |
aattgaaagaatagccacgacaacagctaattgtgattaaagaagccccctgcaaacatgtaaacggaagtacactcagcaaaaggggatttcatacaaa |
116 |
Q |
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| T |
12369393 |
aattgaaagaaaagccacgacaacagctaattgtgattaatgaag-cccctgcaaacaagtaaacagaaggacacgcagcaaaa-gggattaaatacaaa |
12369490 |
T |
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| Q |
117 |
cacacaagcc |
126 |
Q |
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| T |
12369491 |
cacacaagcc |
12369500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 417 - 497
Target Start/End: Original strand, 12369813 - 12369892
Alignment:
| Q |
417 |
cggcaatggaaaatggtagggattgggatccaaataattcaacagtagcgatgaaacatatatatgtaactacggctgtaa |
497 |
Q |
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| T |
12369813 |
cggcaagggaaaatggtagggattgg-atccaaataattcaacaatagcgatgaaacatatatatggaactacggctgtaa |
12369892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 699
Target Start/End: Original strand, 12370011 - 12370044
Alignment:
| Q |
666 |
ataggactaggagtagggttagggtttgttaaaa |
699 |
Q |
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| T |
12370011 |
ataggattaggagtagggttagggtttgttaaaa |
12370044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 666 - 812
Target Start/End: Original strand, 3336114 - 3336257
Alignment:
| Q |
666 |
ataggactaggagtagggttagggtttgttaaaaagcagagnnnnnnnntgtgataacactgcttgaattggggaggaagcaagcaaacgcctttgacag |
765 |
Q |
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| T |
3336114 |
ataggactaggagtagagttagggtttgttaaaa-gtagagaaaaaa--tgtgataacactgcttgaattggggaggaagcaagcaaacgtgtttgacag |
3336210 |
T |
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| Q |
766 |
gatttggctgtgcagcttgcatttgcattgggacaattttggatatt |
812 |
Q |
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| T |
3336211 |
gatttggctgtgcagcttgcatttggattgggacaattttgaatatt |
3336257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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