View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14747_low_12 (Length: 319)

Name: NF14747_low_12
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14747_low_12
NF14747_low_12
[»] chr3 (1 HSPs)
chr3 (19-308)||(52584350-52584639)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 52584350 - 52584639
Alignment:
Q  19 acggtttctgtattcatcaacaagcatgtgagagcctaaagaaagggataggccttgttgtgtctggtgattattctcgtttgctgcaccaagtagatcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52584350 acggtttctgtattcatcaacaagcatgtgagagcctaaagaaagggataggccttgttgtgtctggtgattattctcgtttgctgcaccaagtagatcc 52584449  T
Q  119 atcaaatgtcttgtgtgactcatctcagaaccttgtgctagcccaatattgttagaaaatgttccaagtgattcatgatatgcattgttgtttctcaaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52584450 atcaaatgtcttgtgtgactcatctcagaaccttgtgctagcccaatattgttagaaaatgttccaagtgattcatgatatgcattgttgtttctcaaag 52584549  T
Q  219 aagatgaaacataaccaccacctagtagttcttggttctcaaattgattttgatgggtcatggagtttgacatcattaattgtagctagc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52584550 aagatgaaacataaccaccacctagtagttcttggttctcaaattgattttgatgggtcatggagtttgacatcattaattgtagctagc 52584639  T

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