View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14747_low_14 (Length: 269)
Name: NF14747_low_14
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14747_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 40943223 - 40942961
Alignment:
| Q |
5 |
aaatggtcagtgtttcgccaccaagatggaccaccggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttcattgcctcagc |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||| ||||| |
|
|
| T |
40943223 |
aaatggtcagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgtttcacttcatccaagtgactgcctttcattgcttcagc |
40943124 |
T |
|
| Q |
105 |
tgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattggcactgttttttgtgata |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40943123 |
tgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattggcactgttttttgtgata |
40943024 |
T |
|
| Q |
205 |
gctgctgatattgtttccatatcttaattgataataattaatgttccttaattttgttctgtg |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40943023 |
gctgctgatattgtttccatatcttaattgataataattaatgttccttaattttgttgtgtg |
40942961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 40956542 - 40956323
Alignment:
| Q |
5 |
aaatggtcagtgtttcgccaccaagatggaccaccggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttcattgcctcagc |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||| ||||| |
|
|
| T |
40956542 |
aaatggtcagtgtttcgccaccaagacggaccaccggcttccggtactcctccaccatacgtttcacttcatctatgtgactgcctttcattgcttcagc |
40956443 |
T |
|
| Q |
105 |
tgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattggcactgttttttgtgata |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40956442 |
tgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattggcactgttttttgtgata |
40956343 |
T |
|
| Q |
205 |
gctgctgatattgtttccat |
224 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
40956342 |
gctgctgatattgtttccat |
40956323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 88 - 267
Target Start/End: Complemental strand, 40970235 - 40970056
Alignment:
| Q |
88 |
cctttcattgcctcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattgg |
187 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40970235 |
cctttcattgcttcagctgccacaccccaattcaaaggatcagcttcattcactttcatgttattattcttagcatgaatcaaacagaatgattcattgg |
40970136 |
T |
|
| Q |
188 |
cactgttttttgtgatagctgctgatattgtttccatatcttaattgataataattaatgttccttaattttgttctgtg |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40970135 |
cactgttttttgtgatagctgctgatattgtttccatatcttaattgataataattaatgttccttaattttgttgtgtg |
40970056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 42615167 - 42615255
Alignment:
| Q |
37 |
accggcttccggtactcctccaccatacgcttcacctcatcaaggtgactgcctttcattgcctcagctgccacaccccaattcaaagg |
125 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||||| |||||||| || ||||| | || || || | ||||||||||||||| |
|
|
| T |
42615167 |
accggtttccggtattcctctaccatacgcttcacctcatctaggtgactacccttcatagaatctgcagctataccccaattcaaagg |
42615255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 28187617 - 28187645
Alignment:
| Q |
49 |
tactcctccaccatacgcttcacctcatc |
77 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28187617 |
tactcctccaccatacgcttcacctcatc |
28187645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University