View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14747_low_18 (Length: 233)
Name: NF14747_low_18
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14747_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 27583487 - 27583264
Alignment:
| Q |
6 |
atttgaattgtagattaaattaataacttagctattcaatagactgatttgaagccgatgtaacgcgaatcaccaagtgttttt-aaaatatggtattta |
104 |
Q |
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| T |
27583487 |
atttgaattgtagattaaattaataacttagctattcaatagactgatttgaagctgatgtaacatgaatcaccaagtgttttttaaaaaatggtattta |
27583388 |
T |
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| Q |
105 |
aataagaatggagaaaatactactcatagaaacatcattgacatcacatctttttagatgttaaagagatactcaataatttgtttgtggctacaaatat |
204 |
Q |
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| T |
27583387 |
aataagaatggagaaaatactactcatagaaacatcattgacatcacatctttttagatgttaaaaagatactcaataatttgtttgtggctacaaatat |
27583288 |
T |
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| Q |
205 |
ttaccacatgtcaaggagtataat |
228 |
Q |
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| T |
27583287 |
ttaccacatgtcaaggattataat |
27583264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 27588515 - 27588360
Alignment:
| Q |
72 |
gaatcaccaagtgtttttaaaatatggtatttaaataagaatggagaaaatactactcatagaaacatcattgacatcacatctt------tttagatgt |
165 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
27588515 |
gaatcaccaaatgtttttaaaaaatggtatttaaataagaatggagaaaatactactcatagaaacattattgacatcacatctttttaattttagatgt |
27588416 |
T |
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| Q |
166 |
taaagagatactcaataatttgtttgtggctacaaatatttaccacatgtcaagga |
221 |
Q |
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| T |
27588415 |
taaagagatactcaacaatttgtttatggctacaaatatttaccacatgtcaagga |
27588360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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