View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14747_low_4 (Length: 562)

Name: NF14747_low_4
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14747_low_4
NF14747_low_4
[»] chr6 (4 HSPs)
chr6 (24-562)||(30498452-30498989)
chr6 (191-346)||(17461149-17461304)
chr6 (237-348)||(14813044-14813155)
chr6 (472-521)||(14816926-14816975)
[»] chr2 (3 HSPs)
chr2 (216-348)||(8309669-8309801)
chr2 (234-346)||(29497703-29497815)
chr2 (481-524)||(31482728-31482771)
[»] chr7 (2 HSPs)
chr7 (234-348)||(14579961-14580075)
chr7 (217-348)||(15996947-15997078)
[»] chr4 (7 HSPs)
chr4 (186-347)||(23169377-23169538)
chr4 (237-348)||(10636368-10636479)
chr4 (237-348)||(5237586-5237697)
chr4 (233-346)||(22178864-22178977)
chr4 (472-521)||(10654865-10654914)
chr4 (472-521)||(10869010-10869059)
chr4 (472-521)||(5241468-5241517)
[»] chr1 (5 HSPs)
chr1 (237-348)||(2357976-2358087)
chr1 (233-346)||(52775925-52776038)
chr1 (472-518)||(52779805-52779851)
chr1 (472-521)||(2361685-2361734)
chr1 (456-521)||(13083997-13084062)
[»] chr8 (2 HSPs)
chr8 (211-348)||(187942-188079)
chr8 (472-518)||(44231137-44231183)
[»] chr5 (2 HSPs)
chr5 (204-348)||(9280137-9280281)
chr5 (473-519)||(30997941-30997987)
[»] scaffold0329 (2 HSPs)
scaffold0329 (233-346)||(9254-9367)
scaffold0329 (472-518)||(13134-13180)
[»] chr3 (3 HSPs)
chr3 (233-346)||(19588633-19588746)
chr3 (472-518)||(19584820-19584866)
chr3 (472-518)||(12298525-12298571)


Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 24 - 562
Target Start/End: Original strand, 30498452 - 30498989
Alignment:
Q  24 taatcttgttgatttcacaccttgattcttgttctttgttgcagtttatgcttttgttcgattgaatttctcattcaatcgttcttctctttgatttttc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30498452 taatcttgttgatttcacaccttgattcttgttctttgttgcagtttatgcttttgtttgattgaatttctcattcaatcgttcttctctttgatttttc 30498551  T
Q  124 atcttcttcttcattgttgagcttttcaccttgttctactgtaatctctgcattttcttctcttttccatggctccacctaattcttaaccaaatactga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30498552 atcttcttcttcattgttgagcttttcaccttgttctactgtaatctctgcattttcttctcttttccatggctccacctaattcttaaccaaatactga 30498651  T
Q  224 attggtatactttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaa 323  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30498652 attggtatactttgttcatcacagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaa 30498751  T
Q  324 cgctcattgggaacgaagaacaagcgagggtgcactctgattctcaaaatataaaataggtaacttgatacactaaacttgcaagtcttcaattaagtat 423  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  30498752 cgctcattgggaacgaagaacaagctagggtgcactctgattctcaaaatataaaattggtaacttgatacactaaacttgcaagtctttaattaagtat 30498851  T
Q  424 aagagccattgaagttcataggtgtcagcaactaaagcacaatatcctgcttcagaggaggacctagaaacagtgatttgtttctttgttctccaagata 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  30498852 aagagccattgaagttcataggtgtcagcaactaaagcacaatatcatggttcagaggaggacctag-aacagtgagttgtttctttgttctccaagata 30498950  T
Q  524 ttggagaatatccaaggaaacaacactggcaagagatgg 562  Q
    || ||||||||||||||||||||||||||||||||||||    
T  30498951 ttagagaatatccaaggaaacaacactggcaagagatgg 30498989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 191 - 346
Target Start/End: Original strand, 17461149 - 17461304
Alignment:
Q  191 catggctccacctaattcttaaccaaatactgaattggtatactttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggt 290  Q
    ||||||||||| |||||| | |||  |||||||||  || |||| ||||||||| |||||||| || |  ||  | ||| |||||||||||||||| |||    
T  17461149 catggctccacgtaattcctcacctgatactgaatcagtttactatgttcatccgagtgaaagtcctacatctttatctgttactcccaaactcaatggt 17461248  T
Q  291 tctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaa 346  Q
    || || |||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  17461249 tccaattacatctcttggagtcgcaccgttgaacgctcattgggaacggagaacaa 17461304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 14813044 - 14813155
Alignment:
Q  237 gttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaa 336  Q
    |||||||| |||||| | |||||||| || || |||||||| ||| |||||||||| || || || |||||||||||||| ||||||||||| |||||||    
T  14813044 gttcatcccagtgaaggtcccaattctctttccattactcctaaattcaacggttccaattatatcgcttggagtcgcactgttgaacgctcgttgggaa 14813143  T
Q  337 cgaagaacaagc 348  Q
    ||||||||||||    
T  14813144 cgaagaacaagc 14813155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 521
Target Start/End: Complemental strand, 14816975 - 14816926
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctccaaga 521  Q
    ||||||||||| || ||||| || ||||||||||||||||||||||||||    
T  14816975 gcttcagaggaagatctagatactgtgatttgtttctttgttctccaaga 14816926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 216 - 348
Target Start/End: Original strand, 8309669 - 8309801
Alignment:
Q  216 aatactgaattggtatactttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgca 315  Q
    |||||||||| ||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||    
T  8309669 aatactgaatcggtgtactatgttcatccaaatgaaagccccaattcactctccattactcccaaactcaacggttccaactacatttcttggagtcaca 8309768  T
Q  316 ccgttgaacgctcattgggaacgaagaacaagc 348  Q
    | |||||| | || || ||||||||||| ||||    
T  8309769 ctgttgaatgttctttaggaacgaagaataagc 8309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 29497703 - 29497815
Alignment:
Q  234 tttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgg 333  Q
    |||||||||||||||||| | |  |||||||| ||||| ||| | ||||||| |||||| ||||||||||||| || ||||||  || |||| || ||||    
T  29497703 tttgttcatccaagtgaaggtcataattcactttctatcactactaaactcatcggttcgaactacattgcttagaatcgcactattcaacgttcgttgg 29497802  T
Q  334 gaacgaagaacaa 346  Q
    |||||||||||||    
T  29497803 gaacgaagaacaa 29497815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 524
Target Start/End: Original strand, 31482728 - 31482771
Alignment:
Q  481 gaggacctagaaacagtgatttgtttctttgttctccaagatat 524  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  31482728 gaggatctagatacagtgatttgtttctttgttctccaagatat 31482771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 234 - 348
Target Start/End: Original strand, 14579961 - 14580075
Alignment:
Q  234 tttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgg 333  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | || |||||| | |||||||    
T  14579961 tttgttcatcctagtgagagtcccaattcactctctattactcccaaactcaacggttccaattacattgcttggagtagaactgttgaatgatcattgg 14580060  T
Q  334 gaacgaagaacaagc 348  Q
    |||||||||||||||    
T  14580061 gaacgaagaacaagc 14580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 15996947 - 15997078
Alignment:
Q  217 atactgaattggtatactttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcac 316  Q
    |||||||||  || || ||||||||||| || || || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||    
T  15996947 atactgaatcagtgtattttgttcatcctagcgagagtcccaattcactctctattactcccaaactcaacggttccaattacattgcttggagtagaac 15997046  T
Q  317 cgttgaacgctcattgggaacgaagaacaagc 348  Q
     |||||||| || |||||||||||||||||||    
T  15997047 tgttgaacgatctttgggaacgaagaacaagc 15997078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 186 - 347
Target Start/End: Complemental strand, 23169538 - 23169377
Alignment:
Q  186 ttttccatggctccacctaattcttaaccaaatactgaattggtatactttgttcatccaagtgaaagccccaattcactctctattactcccaaactca 285  Q
    |||||||||||||| | ||| ||| | ||  |||||||||  |||| |||||||||||| |||||||| |||||||| ||||| ||||||||||||||||    
T  23169538 ttttccatggctcctcgtaactctaatcctgatactgaatcagtattctttgttcatcctagtgaaagtcccaattctctctccattactcccaaactca 23169439  T
Q  286 acggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaacgaagaacaag 347  Q
      ||||| || ||||| ||||||||||| || |||||||| || ||||||||||||||||||    
T  23169438 ctggttccaattacatagcttggagtcgtacggttgaacgttcgttgggaacgaagaacaag 23169377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 10636368 - 10636479
Alignment:
Q  237 gttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaa 336  Q
    |||||||| |||||| | |||||||| || ||||||||||| ||| |||||||||| || || ||||||||||||||||| ||||||||||| |||||||    
T  10636368 gttcatcccagtgaaggtcccaattctctttctattactcctaaattcaacggttccaattatattgcttggagtcgcactgttgaacgctcgttgggaa 10636467  T
Q  337 cgaagaacaagc 348  Q
    ||||||| ||||    
T  10636468 cgaagaataagc 10636479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 5237586 - 5237697
Alignment:
Q  237 gttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaa 336  Q
    |||||||| ||||||   |||||||| || || |||||||| ||| |||||||||| || || || |||||||||||||| ||||||||||| |||||||    
T  5237586 gttcatcccagtgaagatcccaattctctttccattactcctaaattcaacggttccaattatatcgcttggagtcgcactgttgaacgctcgttgggaa 5237685  T
Q  337 cgaagaacaagc 348  Q
    ||||||||||||    
T  5237686 cgaagaacaagc 5237697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 22178977 - 22178864
Alignment:
Q  233 ctttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattg 332  Q
    ||||||||||||||||||| | || |||||||| ||||||||||| || || |  |||||||| || ||||| |||| ||| || ||| |||| ||||||    
T  22178977 ctttgttcatccaagtgaaggtcctaattcactttctattactcctaagcttactggttctaattatattgcatggaatcgtacggttcaacgttcattg 22178878  T
Q  333 ggaacgaagaacaa 346  Q
    ||||||||||||||    
T  22178877 ggaacgaagaacaa 22178864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 521
Target Start/End: Complemental strand, 10654914 - 10654865
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctccaaga 521  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  10654914 gcttcagaggaagatctagaaactgtgatttgtttctttgttctccaaga 10654865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 521
Target Start/End: Complemental strand, 10869059 - 10869010
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctccaaga 521  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  10869059 gcttcagaggaagatctagaaactgtgatttgtttctttgttctccaaga 10869010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 472 - 521
Target Start/End: Complemental strand, 5241517 - 5241468
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctccaaga 521  Q
    ||||||||||| || ||||| || ||||||||||||||||||||||||||    
T  5241517 gcttcagaggaagatctagatactgtgatttgtttctttgttctccaaga 5241468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 2357976 - 2358087
Alignment:
Q  237 gttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattgggaa 336  Q
    |||||||| |||||| | |||||||| || || |||||||||||| |||||||||| || || || |||||||||||||||||||||||||| |||||||    
T  2357976 gttcatcccagtgaaggtcccaattctctttccattactcccaaattcaacggttccaattatatcgcttggagtcgcaccgttgaacgctcgttgggaa 2358075  T
Q  337 cgaagaacaagc 348  Q
    ||||||||||||    
T  2358076 cgaagaacaagc 2358087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 52775925 - 52776038
Alignment:
Q  233 ctttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattg 332  Q
    ||||||||||||||||||| | || |||||||| ||||||||||| || || |  |||||||| || ||||| |||| ||| || ||| |||| ||||||    
T  52775925 ctttgttcatccaagtgaaggtcctaattcactttctattactcctaagcttactggttctaattatattgcatggaatcgtacggttcaacgttcattg 52776024  T
Q  333 ggaacgaagaacaa 346  Q
    ||||||||||||||    
T  52776025 ggaacgaagaacaa 52776038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 52779851 - 52779805
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctcca 518  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||    
T  52779851 gcttcagatgaagacctagatacagtgatttgtttctttgttctcca 52779805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 521
Target Start/End: Complemental strand, 2361734 - 2361685
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctccaaga 521  Q
    |||||||| || || ||||| || ||||||||||||||||||||||||||    
T  2361734 gcttcagatgaagatctagagactgtgatttgtttctttgttctccaaga 2361685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 521
Target Start/End: Complemental strand, 13084062 - 13083997
Alignment:
Q  456 taaagcacaatatcctgcttcagaggaggacctagaaacagtgatttgtttctttgttctccaaga 521  Q
    |||||| | |||| |||||  ||| ||||| ||||||||| ||||||||||||| |||||||||||    
T  13084062 taaagccctatattctgctatagatgaggatctagaaacaatgatttgtttcttggttctccaaga 13083997  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 211 - 348
Target Start/End: Original strand, 187942 - 188079
Alignment:
Q  211 aaccaaatactgaattggtatactttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggag 310  Q
    ||||| ||||||||| ||| | ||| |||||||| |||||| | || ||||| || ||||||||||| |||||||||| ||| ||||| |||||||||||    
T  187942 aaccagatactgaatcggtgttcttcgttcatcctagtgaaggtcctaattctctttctattactcctaaactcaacgattccaactatattgcttggag 188041  T
Q  311 tcgcaccgttgaacgctcattgggaacgaagaacaagc 348  Q
    |||||| |||||||| || |||||||||||||| ||||    
T  188042 tcgcactgttgaacgttctttgggaacgaagaataagc 188079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 44231183 - 44231137
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctcca 518  Q
    ||||||||||| || ||||| |||||| |||||||||||||||||||    
T  44231183 gcttcagaggaagatctagacacagtggtttgtttctttgttctcca 44231137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 204 - 348
Target Start/End: Original strand, 9280137 - 9280281
Alignment:
Q  204 aattcttaaccaaatactgaattggtatactttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattg 303  Q
    ||||||| |||  |||||||||  || |||||||||| ||| ||||| | ||| ||||| || || ||||||||||||||||||||||| || |||||||    
T  9280137 aattcttcacctgatactgaatccgtttactttgttcgtcctagtgagaacccaaattctctttccattactcccaaactcaacggttccaattacattg 9280236  T
Q  304 cttggagtcgcaccgttgaacgctcattgggaacgaagaacaagc 348  Q
    |||||| ||| || |||  | | || |||||||||||||||||||    
T  9280237 cttggaatcgtactgttagaagttctttgggaacgaagaacaagc 9280281  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 519
Target Start/End: Original strand, 30997941 - 30997987
Alignment:
Q  473 cttcagaggaggacctagaaacagtgatttgtttctttgttctccaa 519  Q
    ||||||| |||||||| |||||||||||||| |||||||| ||||||    
T  30997941 cttcagatgaggacctggaaacagtgatttgcttctttgtcctccaa 30997987  T

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Target: scaffold0329 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 9254 - 9367
Alignment:
Q  233 ctttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattg 332  Q
    ||||||||||||||||||| | || |||||||| ||||||||||| || || |  |||||||| || ||||| |||| ||| || ||| |||| ||||||    
T  9254 ctttgttcatccaagtgaaggtcctaattcactttctattactcctaagcttactggttctaattatattgcatggaatcgtacggttcaacgttcattg 9353  T
Q  333 ggaacgaagaacaa 346  Q
    ||||||||||||||    
T  9354 ggaacgaagaacaa 9367  T

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Target: scaffold0329; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 13180 - 13134
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctcca 518  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||    
T  13180 gcttcagatgaagacctagatacagtgatttgtttctttgttctcca 13134  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 19588746 - 19588633
Alignment:
Q  233 ctttgttcatccaagtgaaagccccaattcactctctattactcccaaactcaacggttctaactacattgcttggagtcgcaccgttgaacgctcattg 332  Q
    |||||||||||||||| ||   || |||||||| ||||||||||| || || |  |||||||| || ||||| |||| ||| || ||| |||| ||||||    
T  19588746 ctttgttcatccaagtaaagatcctaattcactttctattactcctaagcttactggttctaattatattgcatggaatcgaacggttcaacgttcattg 19588647  T
Q  333 ggaacgaagaacaa 346  Q
    ||||||||||||||    
T  19588646 ggaacgaagaacaa 19588633  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 518
Target Start/End: Original strand, 19584820 - 19584866
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctcca 518  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||    
T  19584820 gcttcagatgaagacctagatacagtgatttgtttctttgttctcca 19584866  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 12298571 - 12298525
Alignment:
Q  472 gcttcagaggaggacctagaaacagtgatttgtttctttgttctcca 518  Q
    |||||||| || |||||||| ||||||||||||||||| ||||||||    
T  12298571 gcttcagatgaagacctagatacagtgatttgtttcttcgttctcca 12298525  T

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