View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14747_low_5 (Length: 508)
Name: NF14747_low_5
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14747_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 48565212 - 48565444
Alignment:
| Q |
19 |
cataggaaagcaaatgcataccgattcacttggtagtttaataaaattattttttgttagttcatattgatttacattatcttgcggtgcaaacttataa |
118 |
Q |
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| T |
48565212 |
cataggaaagcaaatgcataccgattcacttggtagtttaataaaattattttttgttagttcatattgatttacattatcttgcggtgcaaacttataa |
48565311 |
T |
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| Q |
119 |
aaactaaacatttgatgacttctgcatgctaactaacataagtctttttcatttaatctgagttatttaaataccgctagtgaatttccgagatttctac |
218 |
Q |
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| T |
48565312 |
aaactaaacatttgatgacttctacatgctaactaacataagtc-ttttcatttaatctgag----ttaaataccgctagtgaatttccgagatttctac |
48565406 |
T |
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| Q |
219 |
agtctagtctaaccatgatgaccaaaggcttattctat |
256 |
Q |
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| T |
48565407 |
agtctagtctaaccatgatgaccaaaggcttattctat |
48565444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 402 - 508
Target Start/End: Original strand, 48567921 - 48568027
Alignment:
| Q |
402 |
caaggtataagtacttaagagcaggtctatagttaacattttaggtcattcaaaattgattaatttgaaagagatatccaagcatatttgaaagcctcaa |
501 |
Q |
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| T |
48567921 |
caaggtataagtacttaagagcaggtctatagttaacattttaggtcattcaaaattgattaatttgaaagagatatccgagcatatttgaaagcctcaa |
48568020 |
T |
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| Q |
502 |
gagagtt |
508 |
Q |
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| T |
48568021 |
gagagtt |
48568027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 48565488 - 48565548
Alignment:
| Q |
268 |
tgagggatgggaaattaaatcatcatatttgaagtgtgtgcaatctccctcttttttctct |
328 |
Q |
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| T |
48565488 |
tgaggtatgggaaattgaatcatcatatttgaagtgtgtgcaatctccctcttttttctct |
48565548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 406
Target Start/End: Original strand, 48565571 - 48565601
Alignment:
| Q |
376 |
tatgtcactggttcgtcctctcttcacaagg |
406 |
Q |
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| T |
48565571 |
tatgtcactggttcgtcctctcttcacaagg |
48565601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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