View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14747_low_7 (Length: 437)
Name: NF14747_low_7
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14747_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 140 - 414
Target Start/End: Complemental strand, 43588873 - 43588599
Alignment:
| Q |
140 |
accaccactacccaccatggctagtatctcaattttccgacgacctttatccgatgacatcgttctgtccctttcaactggagatcaatttggtattatt |
239 |
Q |
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| T |
43588873 |
accaccactacccaccatggccagtatctcaatttcccgacgacctttatccgatgacatcgttctgtccctttcaactggagatcaatttggtattctt |
43588774 |
T |
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| Q |
240 |
gcatatggtcttcaagctatgacatattaaaccgtggaggtggccgtacgaagaatcactgtgaaattgagcacaaattttgaacacgaggaatcactgt |
339 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43588773 |
gcatatggtcttcaagctatgacagatttaaccgtggagatggtcgtacgaagaatcactgtgaaattgagcacaaattttgaacacgaggaatcactgt |
43588674 |
T |
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| Q |
340 |
aaagtgacccatcaacacccatcagaacttgaattttgtagtagtgaaattgaggacgaggaacgtttctaccag |
414 |
Q |
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| T |
43588673 |
aaagtgacccatcaacacccatcagaacttgaattttatagtagtgaaattgaggacgaggaacgtttctaccag |
43588599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 43599566 - 43599441
Alignment:
| Q |
15 |
ggagcacagagcagacattttttcatcctatttaattggaggtattatattcggcattgacttattgttagttatataccggcggtactacaaaatctta |
114 |
Q |
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| T |
43599566 |
ggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcattgacttattgttagttatataccggcggtacaacaaaatctta |
43599467 |
T |
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| Q |
115 |
ctgtttgtactttttctttcgtctga |
140 |
Q |
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| T |
43599466 |
ctgtttgtactttttctttcgtctga |
43599441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 43605058 - 43604933
Alignment:
| Q |
15 |
ggagcacagagcagacattttttcatcctatttaattggaggtattatattcggcattgacttattgttagttatataccggcggtactacaaaatctta |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43605058 |
ggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcattgacttattgttagttatataccggcggtacaacaaaatctta |
43604959 |
T |
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| Q |
115 |
ctgtttgtactttttctttcgtctga |
140 |
Q |
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| T |
43604958 |
ctgtttgtactttttctttcgtctga |
43604933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 43610550 - 43610425
Alignment:
| Q |
15 |
ggagcacagagcagacattttttcatcctatttaattggaggtattatattcggcattgacttattgttagttatataccggcggtactacaaaatctta |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43610550 |
ggagcacggagcagacattttttcatcctatttaattggaggtattatattcggcattgacttattgttagttatataccggcggtacaacaaaatctta |
43610451 |
T |
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| Q |
115 |
ctgtttgtactttttctttcgtctga |
140 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43610450 |
ctgtttgtactttttctttcgtctga |
43610425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 55338828 - 55338945
Alignment:
| Q |
19 |
cacagagcagacattttttcatcctatttaattggaggtattatattcggcattgacttattgttagttatataccggcggtactacaaaatcttactgt |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||| |
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| T |
55338828 |
cacagaacagacattttttcatcctatttaattggaagtattatattcggcattgacttatt----gttatatacagacggtacaacaaaatcttactgt |
55338923 |
T |
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| Q |
119 |
ttgtactttttctttcgtctga |
140 |
Q |
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|||||||||||||||||||||| |
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| T |
55338924 |
ttgtactttttctttcgtctga |
55338945 |
T |
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