View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14747_low_9 (Length: 326)
Name: NF14747_low_9
Description: NF14747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14747_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 31104040 - 31104347
Alignment:
| Q |
18 |
acaaaaaacaccgtcgcaactaccataaatttcaattcttgcaacgtcttgaggaaacaaagatttgatgggaattgatttctgatcattgcctccatca |
117 |
Q |
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| T |
31104040 |
acaaaaaacaccgtcgcaactaccataaatttcaattcttgcaacgtcttgaggaaacaaagatttgatgggaattgatttctgatcattgcctccatca |
31104139 |
T |
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| Q |
118 |
cagaagataaacttcatgttaggtgcgttttgaaggattagaagacgatttcttctagtagcaaaatagggacttttgatgatattgttccatgattttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31104140 |
cagaagataaacttcatgttaggtgcgttttgaaggattagaagacgatttcttctagtagcaaaatagggacttttgatgatattgttccatgattttt |
31104239 |
T |
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| Q |
218 |
gaacacatttgaaacgcgacaaagattttgttggtagccgcaacaatatctctatctccaattcttctccaagcttcattctctcta--ctcaactcagt |
315 |
Q |
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| T |
31104240 |
gaacacatttgaaacgcgacaaagattttgttggtagccgcaacaatatctctatctccaattcttctccaagcttcattctctctatgctcaacttagt |
31104339 |
T |
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| Q |
316 |
tcttctca |
323 |
Q |
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| |||||| |
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| T |
31104340 |
ttttctca |
31104347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 287
Target Start/End: Complemental strand, 31106804 - 31106684
Alignment:
| Q |
167 |
ttcttctagtagcaaaatagggacttttgatgatattgttccatgatttttgaacacatttgaaacgcgacaaagattttgttggtagccgcaacaatat |
266 |
Q |
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|||||||||| ||||||||||| |||| |||| ||||||||||||| |||||||||||||| |||| ||| ||||||| |||||||||||| ||||| |
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| T |
31106804 |
ttcttctagtcacaaaatagggagttttaatgagattgttccatgatctttgaacacatttgctacgcatcaatgattttgctggtagccgcaataatat |
31106705 |
T |
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| Q |
267 |
ctctatctccaattcttctcc |
287 |
Q |
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| T |
31106704 |
ctctatatccgaatcttctcc |
31106684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 38956747 - 38956831
Alignment:
| Q |
191 |
ttttgatgatattgttccatgatttttgaacacatttgaaacgcgacaaagattttgttggtagccgcaacaatatctctatctc |
275 |
Q |
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|||| |||| ||||||||||||| |||||||||||||| ||| | || ||||||| |||||||||| ||||||| ||| |||| |
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| T |
38956747 |
ttttaatgagattgttccatgatctttgaacacatttgcaacacatcagtgattttgctggtagccgcgacaatatttctctctc |
38956831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 1177700 - 1177649
Alignment:
| Q |
179 |
caaaatagggacttttgatgatattgttccatgatttttgaacacatttgaa |
230 |
Q |
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| T |
1177700 |
caaaagagggacttttgatcagaatgttccatgatttttcaacacatttgaa |
1177649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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