View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14748_low_1 (Length: 499)
Name: NF14748_low_1
Description: NF14748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14748_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 11612946 - 11612646
Alignment:
| Q |
11 |
aagcaaaggaaaaagaaaaggaccttaagactaaaaggcaaaccaaacatgcagaagaaactagatcaatggaaataatttacaaaatcaattagagtga |
110 |
Q |
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| T |
11612946 |
aagcaaaggaaaaagaaaaggaccttaagactaaaaggcaaaccaaacatgcagaagaaactagatcaatggaaatactttacaaaatcaattagagtga |
11612847 |
T |
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| Q |
111 |
ggacaaaagcagaagctagattacatcataccaaactatatagaaacatgaaaattaaaaaaggcttcatgttgaagataaagaccagctgaactgtaac |
210 |
Q |
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| T |
11612846 |
ggacaaaagcagaagctagattacatcataccaaactatatagaaacatgaaaattaaaaaaggcttcatgttgaagataaagaccagctgaactgtaac |
11612747 |
T |
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| Q |
211 |
aggtccactctcacagtcataccaaccaaccataacaaaatctttaacattaagcaatttctaagataacccttgtaagcttatcctttgataaatacac |
310 |
Q |
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| T |
11612746 |
aggtccactctcacagtcacaccaaccaaccataacaaaatctttaacattaagcaatttctaatgtaacccttttaagcttatcctttgataaatacac |
11612647 |
T |
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| Q |
311 |
t |
311 |
Q |
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| T |
11612646 |
t |
11612646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 437 - 481
Target Start/End: Complemental strand, 11612520 - 11612476
Alignment:
| Q |
437 |
ggtaagaactttggtgaattaagtgaaaagcagtaaaagatattt |
481 |
Q |
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| T |
11612520 |
ggtaagaactttggtgaattaagtgaaaagcagtaaaagatattt |
11612476 |
T |
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