View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14748_low_2 (Length: 387)
Name: NF14748_low_2
Description: NF14748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14748_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 27 - 365
Target Start/End: Original strand, 31104337 - 31104675
Alignment:
| Q |
27 |
agtttttctcaaccgactgaattttttattgtgaacaatcaagtaacacattaccgaggtttaaatagaagagggtcattctattttcggaatcctgaac |
126 |
Q |
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| T |
31104337 |
agtttttctcaaccgactgaattttttattgtgaacaatcaagtaacacattaccgaggtttaaatagaagagggtcattctattttcggaatcctgaac |
31104436 |
T |
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| Q |
127 |
aaactaaaatttatataaaagattatgtttgtttttattttgagaggagataaaagataaagatatcatttaattttattttatttcaaaggagaaagtt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31104437 |
aaactaaaatttatataaaagattatgtttgtttttattttgagaggagataaaagataaagatatcatttaatttaattttatttcaaaggagaaagtt |
31104536 |
T |
|
| Q |
227 |
atcaactaattttnnnnnnngataaaattgatcgtaatagtannnnnnnnnnnnnatctatatctattctattctttaacaatatataaagtgaagtata |
326 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31104537 |
atcaactaatttttaaaaaagataaaattgatcgtaatagtatttttttttttttatctatatctattctattctttaacaatatataaagtgaagtatg |
31104636 |
T |
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| Q |
327 |
nnnnnnnnnaagtggattttttattatttctaagtacgt |
365 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31104637 |
attttttttaagtggattttttattatttctaagtacgt |
31104675 |
T |
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