View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14748_low_3 (Length: 358)
Name: NF14748_low_3
Description: NF14748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14748_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 196 - 342
Target Start/End: Complemental strand, 35107930 - 35107784
Alignment:
| Q |
196 |
aaaggtagataaggtcattaaactctaaacatgaagttcatgttttctctgacaggtactcacctcatgggagatggacaactgaggaaaacataaaatg |
295 |
Q |
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| T |
35107930 |
aaaggtagataaggtcattaaactctaaatatgaagttcatgttttctctgacaggtactcacctcatgggagatggacaactgaggaaaacataaaatg |
35107831 |
T |
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| Q |
296 |
ggaaaggctaagagtaccacctattgactcttcttcacatgttcttc |
342 |
Q |
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| T |
35107830 |
ggaaaggctaagagtaccacctattgactcttcttcacatgttcttc |
35107784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 35108060 - 35107975
Alignment:
| Q |
62 |
aacactaataataatttaagaaaatgaaaataattgaatgagccccttgtgttagtgacatgtgccggtgtcagacaccgaaatgc |
147 |
Q |
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| T |
35108060 |
aacactaataataatttaagaaaatgaaaataattgaatgaaccccttgtgttagtggcatgtgccggtgtcagacactgaaatgc |
35107975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 35108093 - 35108064
Alignment:
| Q |
11 |
tgtccttttggtttaattctgaaccggaca |
40 |
Q |
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| T |
35108093 |
tgtccttttggtttaattctgaaccggaca |
35108064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 30585168 - 30585121
Alignment:
| Q |
54 |
aacatgtaaacactaataataatttaagaaaatgaaaataattgaatg |
101 |
Q |
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| T |
30585168 |
aacatgtagacactaataataatttaagaaaatgaaagtgattgaatg |
30585121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 16330974 - 16331020
Alignment:
| Q |
55 |
acatgtaaacactaataataatttaagaaaatgaaaataattgaatg |
101 |
Q |
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||||||| |||||| ||||||||||||||||||||||| ||| |||| |
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| T |
16330974 |
acatgtagacactagtaataatttaagaaaatgaaaatgattaaatg |
16331020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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