View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14748_low_6 (Length: 242)
Name: NF14748_low_6
Description: NF14748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14748_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 9232450 - 9232224
Alignment:
| Q |
16 |
aatatcctcaacacgatactcaaacaatgatggttccaaaacagcatacacatgattagtactactattcccatgtctgctacaacgactcgtgtccacc |
115 |
Q |
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| T |
9232450 |
aatatcctcaacacgatactcaaacaatgatggttccaaaacagaatacacatgattagtactactattcccatgtctgctacaacgactcgtgtccacc |
9232351 |
T |
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| Q |
116 |
ttaacgtaccgtggatcttttattggacttgaacaattgaaatacgctattctcaatggatttattggatccagaatgaacggttcagatccaaaattgt |
215 |
Q |
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| T |
9232350 |
ttaacgtaccgtggatcttttattggacttgaacaattgaaatacgctattctcaatggatttattggatccagaatgaacggttcagatccaaaattgt |
9232251 |
T |
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| Q |
216 |
cttcgccaaaaagaacattattaaaac |
242 |
Q |
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| T |
9232250 |
cttctccaaaaagaacattattaaaac |
9232224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 9386218 - 9386340
Alignment:
| Q |
42 |
atgatggttccaaaacagcatacacatgattagtactactattcccatgtctgctacaacgactcgtgtccaccttaacgtaccgtggatcttttattgg |
141 |
Q |
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||||| |||||||||| ||||| ||||||||||||||||||||||||||| || |||||| ||| ||||||| ||||| ||| ||||||| ||||| |
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| T |
9386218 |
atgattgttccaaaactgcatatacatgattagtactactattcccatgtatgttacaacagctcatgtccacgttaacatacatatgatctttaattgg |
9386317 |
T |
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| Q |
142 |
acttgaacaattgaaatacgcta |
164 |
Q |
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| T |
9386318 |
attagaacaattgaaatacgcta |
9386340 |
T |
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