View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_high_10 (Length: 270)
Name: NF14749_high_10
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2184381 - 2184130
Alignment:
| Q |
1 |
cacagtgatgttttgtatgagctgaggatgtgagatccaagagtgaatgattttttgagagagagggttgagagcaagacctgcaccagtgggatttcca |
100 |
Q |
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| T |
2184381 |
cacagtgatgttttgtatgagctgaggatgtgagatccaagagtgaatgattttttgagagagagggttgagagcaagacctgcaccagtgggatttcca |
2184282 |
T |
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| Q |
101 |
gttggaggtgaaatggttttttcaagaacaataacatcccaacctgctaaagtaagagcatttgcacttgatataccagctatgctacccccaacaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2184281 |
gttggaggtgaaatggttttttcaagaacaataacatcccaacctgctaaagtaagagcatttgcacttgatataccagctatgctacccccaacaatca |
2184182 |
T |
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| Q |
201 |
ctgcttttggttttcttccttctctatccatttgctcttcattcacctggtt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2184181 |
ctgcttttggttttcttccttctctatccatttgctcttcattcacctggtt |
2184130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 2182226 - 2182432
Alignment:
| Q |
35 |
atccaagagtgaatgattttttgagagagagggttgagagcaagacctgcaccagtgggatttccagttggaggtgaaatggttttttcaagaacaataa |
134 |
Q |
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|||||||| |||||||||| ||||||||| | |||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||| | |
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| T |
2182226 |
atccaagattgaatgatttgttgagagagggagttgagtccaagacctgcaccagtaggacttccagttggaggtgaggtggttttttcaaggacaagga |
2182325 |
T |
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| Q |
135 |
catcccaacctgctaaagtaagagcatttgcacttgatataccagctatgctacccccaacaatcactgcttttggttttcttccttctctatccatttg |
234 |
Q |
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|||||||||| ||||| |||| |||| |||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||||| | |||| | |
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| T |
2182326 |
catcccaaccagctaagataagggcatgtgcacttgatatccctcctatgctacctccaacaatcactgcctttggttttcttccttctccaaccatctt |
2182425 |
T |
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| Q |
235 |
ctcttca |
241 |
Q |
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||||||| |
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| T |
2182426 |
ctcttca |
2182432 |
T |
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