View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14749_high_3 (Length: 390)
Name: NF14749_high_3
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 133 - 383
Target Start/End: Complemental strand, 1740918 - 1740671
Alignment:
| Q |
133 |
aaacacctttcataaatatggttatcattaacaatattagtaggtaccttttatataagtcatatggttatcattaactcgcattgcacagttcatgaat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1740918 |
aaacacctttcataaatatggttatcattaaccatattagtagctaccttttatagaagttatatggttatcattaactcgcattgcacagttcataaat |
1740819 |
T |
|
| Q |
233 |
atgcattttataataagaatttgataaggcatattagtaggtacctttgaaaattttgatgagagccaagctacttgaatttgtggtcgactgtaaaatt |
332 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1740818 |
atgtgttttataataagaatttgataaggcatgttag---gtaccttttaaaattttgatgagagccaagctacttgaatttgtggtcgactgtaaaatt |
1740722 |
T |
|
| Q |
333 |
ggtcccaaaacaagagtaggacaaatggttaccacgttaagtccagttctt |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1740721 |
ggtcccaaaacaagagtaggacaaatggttaccacgttaagtccagttctt |
1740671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 208 - 383
Target Start/End: Original strand, 2009592 - 2009767
Alignment:
| Q |
208 |
aactcgcattgcacagttcatgaatatgcattttataataagaatttgataaggcatattagtaggtacctttgaaaattttgatgagagccaagctact |
307 |
Q |
| |
|
||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||| |||| ||||| |||| |||||||||| |
|
|
| T |
2009592 |
aactcgcattgtatagttcataaacatgcattttttaataagaatttgataaggcatatcagtaggtaccttttaaaagtttgacgagaaccaagctact |
2009691 |
T |
|
| Q |
308 |
tgaatttgtggtcgactgtaaaattggtcccaaaacaagagtaggacaaatggttaccacgttaagtccagttctt |
383 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2009692 |
tgcatttgtggttgactgtaaaattggtcccaaaacaagagtaggacaaatggttaccacgttaagtccagttctt |
2009767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 2009324 - 2009454
Alignment:
| Q |
7 |
gatctatctagttagtagaagatagtgtagcgtagcagtggactcccaaaacactataacggtgaagcaggtagtgctatggccatacacttataaaggc |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||| || ||| ||||||||||||||| ||| |
|
|
| T |
2009324 |
gatctatctagttagtagaagatagcgtagcgaagcagccgactcccaaaacaatataacggtgaagcaggta-tggtattgccatacacttataatggc |
2009422 |
T |
|
| Q |
107 |
taaaaaatagaagaatgcacaaaaataaacac |
138 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
2009423 |
taaaaaatagaagaatgcacaaaactaaacac |
2009454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 1740963 - 1740913
Alignment:
| Q |
10 |
ctatctagttagtagaagatagtgtagcgtagcagtggactcccaaaacac |
60 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
1740963 |
ctatctagttagtagaagatagcgtagcgtagcagccgactcccaaaacac |
1740913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 206 - 383
Target Start/End: Original strand, 26221777 - 26221954
Alignment:
| Q |
206 |
ttaactcgcattgcacagttcatgaatatgcattttataataagaatttgataaggcatattagtaggtacctttgaaaattttgatgagagccaagcta |
305 |
Q |
| |
|
|||||| |||||| ||||| || |||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| | |
|
|
| T |
26221777 |
ttaacttgcattgtacagtccaaaaatatgcattttttaatacgaatttgataaggcatatcagtaggtaccttttaaaagtttgatgagagccaagcaa |
26221876 |
T |
|
| Q |
306 |
cttgaatttgtggtcgactgtaaaattggtcccaaaacaagagtaggacaaatggttaccacgttaagtccagttctt |
383 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26221877 |
cttgtatttgtggttgactataaaattggtcccaaaacaagagtaggacaaatggttaccacgttaagtccagttctt |
26221954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 26221604 - 26221725
Alignment:
| Q |
7 |
gatctatctagttagtagaagatagtgtagcgtagcagtggactcccaaaacactataacggtgaagcaggtagtgctatggccatacacttataaaggc |
106 |
Q |
| |
|
||||||||||||||| || |||||| ||||| || ||| |||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
26221604 |
gatctatctagttagcagcagatagcgtagcataacagccgactcccaaaacacgattgcggtgaagcgggtagtggtatggccatacacttataaaggc |
26221703 |
T |
|
| Q |
107 |
taaaaaatagaagaatgcacaa |
128 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
26221704 |
taaaaaatagaagaatggacaa |
26221725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University