View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_high_5 (Length: 314)
Name: NF14749_high_5
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 7389155 - 7389440
Alignment:
| Q |
11 |
tccaagaatattaaaataaacactccaaatgggaggtttagttgggttgtaaactaatggatcattatcaggtccatttaattctcggttcccatcaaac |
110 |
Q |
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| T |
7389155 |
tccaagaatattaaaataaacactccaaatgggaggtttagttgggttgtaaactaatggatcattatcaggtccatttaattcttggttcccatcaaac |
7389254 |
T |
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| Q |
111 |
taataaaaagatcaagccacctaagcagacagtgtaaactagaaatgaaatattacatcaaacatggctatcttaagtcaaaaagattgatagactcaaa |
210 |
Q |
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| T |
7389255 |
taacaaaaagatcaagccacctatgcagacagtgtaaactaggaatgaaatattacatcaaacatggctatcttaagtcaaaaagattgatagactcaaa |
7389354 |
T |
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| Q |
211 |
ttttggtatcagggaatacatacttcttcatcaagtttctcttggcttgaacatagacatatcacatactttattcgggttaagat |
296 |
Q |
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| T |
7389355 |
ttttggtatcagggaatacatacttcttcatcaagtttctcttggcttgaacatagacatatcacatactttattcgggttaagat |
7389440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 1341738 - 1342030
Alignment:
| Q |
11 |
tccaagaatattaaaataaacactccaaatgggaggtttagttgggttgt---aaactaatggatcattatcaggtccatttaattctcggttcccatca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
1341738 |
tccaagaatattaaaataaacactccaaatgggaggtttagttgggttgttgtaagctaatggaacattatcaggtccatttagttcttggttcccatca |
1341837 |
T |
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| Q |
108 |
aactaataaaaagatcaagccacctaagcagacagtgtaaactagaaatgaaatattacatca-----aacatggctatcttaagtcaaaaagattgata |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
1341838 |
gactaataaaaagatcaagccacctaagcagacagtgtaaactagaaatgaaatattacattaagtataacatgtctatcttaagtcaaaaagattgata |
1341937 |
T |
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| Q |
203 |
gactcaaattttggtatcagggaatacatacttcttcatcaagtttctcttggcttgaacatagacatatcacatactttattcgggttaaga |
295 |
Q |
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|||||||| |||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| || ||||||||| |
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| T |
1341938 |
gactcaaactttggtatcaaggactacatacttctccatcaagtttctcttgccttgaacatagacgtatcacatactttgtttgggttaaga |
1342030 |
T |
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