View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_high_6 (Length: 304)
Name: NF14749_high_6
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 27430027 - 27430308
Alignment:
| Q |
7 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
106 |
Q |
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| T |
27430027 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27430126 |
T |
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| Q |
107 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaa |
206 |
Q |
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| T |
27430127 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaa |
27430226 |
T |
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| Q |
207 |
gatgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaag |
288 |
Q |
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| T |
27430227 |
gatgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaag |
27430308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 27447304 - 27447478
Alignment:
| Q |
7 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
106 |
Q |
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| T |
27447304 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27447403 |
T |
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| Q |
107 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga |
181 |
Q |
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| T |
27447404 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga |
27447478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 27447476 - 27447544
Alignment:
| Q |
209 |
tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaaga |
277 |
Q |
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| T |
27447476 |
tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaaga |
27447544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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