View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_low_13 (Length: 288)
Name: NF14749_low_13
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_low_13 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 38864571 - 38864828
Alignment:
| Q |
13 |
gagatgaacatgtttatgctgccttccaatacttcgataaagataacagcgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatat |
112 |
Q |
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| T |
38864571 |
gagaagaacatgtttatactgccttccaatacttcgataaagataacaacgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatat |
38864670 |
T |
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| Q |
113 |
atttggccctcatttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctc |
212 |
Q |
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| T |
38864671 |
atttggccctcatttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctc |
38864770 |
T |
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| Q |
213 |
catgagtataacatgcatgatggcaggtacataaaagaaatcatttcagaagttgatg |
270 |
Q |
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| T |
38864771 |
catgagtataacatgcatgatggtaggtacataaaagaaatcatttcagaagttgatg |
38864828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 38808818 - 38808564
Alignment:
| Q |
13 |
gagatgaacatgtttatgctgccttccaatacttcgataaagataacagcgggtaaagaaaatttaaataaatcaataaaatcaacttggttgaatatat |
112 |
Q |
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| T |
38808818 |
gagaagaacatgtttatactgccttccaattcttcgataaagataacagcgggtaaagaaaatt-aaataaatccgtaaaaccaacatggttggatatat |
38808720 |
T |
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| Q |
113 |
atttggccctcatttggatactaattggtgttatatcttctaatcacattgcttttccataattaggtacattaccattgaagaactagagcaagctctc |
212 |
Q |
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| T |
38808719 |
atttgcccttcctttggatactaattgttc--aaatcttctgatctcactgcttttccataattaggtacatcaccattgaagaactagagcaagctctc |
38808622 |
T |
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| Q |
213 |
catgagtataacatgcatgatggcaggtacataaaagaaatcatttcagaagttgatg |
270 |
Q |
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| T |
38808621 |
catgagtataacatgcatgacggcagggacataaaagaaatcatttcagaagttgatg |
38808564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 73029 - 72936
Alignment:
| Q |
177 |
aggtacattaccattgaagaactagagcaagctctccatgagtataacatgcatgatggcaggtacataaaagaaatcatttcagaagttgatg |
270 |
Q |
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| T |
73029 |
aggttcattaccactgaagaactagatcaagctctccgtgaatacaacatgcatgatggcagagacatcaaagagatacttcaagaagttgatg |
72936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 73206 - 73150
Alignment:
| Q |
13 |
gagatgaacatgtttatgctgccttccaatacttcgataaagataacagcgggtaaa |
69 |
Q |
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| T |
73206 |
gagaagaacatctttacactgccttccaatactttgataaagataacagcgggtaaa |
73150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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