View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_low_17 (Length: 260)
Name: NF14749_low_17
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29266830 - 29266598
Alignment:
| Q |
1 |
tcaagaaccttatttcaaaattgatgtttatcacctaagagtcgccaccaccacttatcatcaaaaactctcaactctcaaattcataaaccagtcacct |
100 |
Q |
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| T |
29266830 |
tcaagaaccttatttcaaaattgttgtttatcacctaagagtcgccaccaccacttatcatcaaaaactctcaactctcaaattcataaaccactcacct |
29266731 |
T |
|
| Q |
101 |
tataaggcctacaaacgtcttcccacctgactctttcattca-ccctaattttaaaatctccctaaagaaaaagtatctgaatttgaaccgcggatttcc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||| |
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| T |
29266730 |
tataaggcctacaaacgtcttcccacctgactctttgatccacccctaattttgaaatctccctaaagaaaaagtatttgaatttgatcttcggatttcc |
29266631 |
T |
|
| Q |
200 |
aaactttgacttcatcataaaaatataaagttagaa |
235 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
29266630 |
aaactttgact---tcataaaaatataaagttagaa |
29266598 |
T |
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