View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_low_19 (Length: 237)
Name: NF14749_low_19
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 3575292 - 3575501
Alignment:
| Q |
12 |
tatagattaatttattaataataagtaaaaatagatgctcacatttgttgcttgctttgtattgaaacaagaagaattatgcaaaataggaagtgatgaa |
111 |
Q |
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| T |
3575292 |
tatatattaatttattaataataagtaaaagtagatgctcacatttgttgcttgctttgtattgaaacaagaagagttatgcaaaataggaagtgatgaa |
3575391 |
T |
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| Q |
112 |
caaactgaatggtacttctttagtcataaagataagaagtatccaacgagcagtcgtacaaatagagctacaaaagcaggattctggaaagctacaggaa |
211 |
Q |
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| T |
3575392 |
caaactgaatggtacttctttagtcataaagataagaagtatccaacgagcagtcgtacaaatagagctacaaaagcaggattctggaaagctacaggaa |
3575491 |
T |
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| Q |
212 |
gagacaaagc |
221 |
Q |
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|||||||||| |
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| T |
3575492 |
gagacaaagc |
3575501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 42048748 - 42048617
Alignment:
| Q |
84 |
agaattatgcaaaataggaagtgatgaacaaactgaatggtacttctttagtcataaagataagaagtatccaacgagcagtcgtacaaatagagctaca |
183 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| | | ||| || |||||||| ||| |
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| T |
42048748 |
agaattatgcaaaataggaagtgatgaacaaaatgactggtatttctttagtcataaagataagaagtatccaacaggaactcgaacgaatagagcaaca |
42048649 |
T |
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| Q |
184 |
aaagcaggattctggaaagctacaggaagaga |
215 |
Q |
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| T |
42048648 |
aaagcaggattctggaaagccacaggaagaga |
42048617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 12851189 - 12851317
Alignment:
| Q |
91 |
tgcaaaataggaagtgatgaacaaactgaatggtacttctttagtcataaagataagaagtatccaacgagcagtcgtacaaatagagctacaaaagcag |
190 |
Q |
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| T |
12851189 |
tgcagaataggaacagaagaacaaaatgagtggtatttttttagccataaagataagaagtatccaactggtacaagaacaaatagagcaactgcagctg |
12851288 |
T |
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| Q |
191 |
gattctggaaagctacaggaagagacaaa |
219 |
Q |
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|||| |||||||| ||||||||||||||| |
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| T |
12851289 |
gattttggaaagcaacaggaagagacaaa |
12851317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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