View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_low_2 (Length: 495)
Name: NF14749_low_2
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 109 - 479
Target Start/End: Original strand, 26197259 - 26197629
Alignment:
| Q |
109 |
gatttaaaagctaaatgaataaaagaatttaagaccccaccataatttacttagaattgtttaactaattttgcaatatcctctctacactcacaataag |
208 |
Q |
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| T |
26197259 |
gatttaaaagctaaatgaataaaagaatttaagaccccaccataatttacttagaattgtttaactaattttgcaatatcctctctaacctcacaataag |
26197358 |
T |
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| Q |
209 |
ataaattatttacaaacagcctgagccatacttgatacaaacttgattctaactctgagttgcttgtgattgaggactcattgtagaaggagatggttct |
308 |
Q |
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| T |
26197359 |
ataaattatttacaaacagcctgagccatacttgatacaaacttgattctaactctgagttgcttgtgattgaggactcattgtagaaggagatggttct |
26197458 |
T |
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| Q |
309 |
ccttcaggaggaaaatcggagagataagccaacatccgacgaatactcacggaacgcgccggcttgaagctgtttgatctcttgatgttcttggagaata |
408 |
Q |
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| T |
26197459 |
ccttcaggaggaaaatcggagagataagccaacatccgacgaatactcacggaacgcgccggcttgaagctgtttgatctcttgatgttcttggagaata |
26197558 |
T |
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| Q |
409 |
tgtttgatgaatttgaaaggataaggtacaccaaagcttggactaggatgaacatagccaccttcaataac |
479 |
Q |
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| T |
26197559 |
tgtttgatgaatttgaaaggataaggtacaccaaagcttggactaggacgaacatagccaccttcaataac |
26197629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 26197197 - 26197272
Alignment:
| Q |
9 |
atacaaacaaaaacaaactactaccaatccaattccattcataaatatattacatgatactatatgatttaaaagctaa |
87 |
Q |
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| T |
26197197 |
atacaaacaaaaacaaactactaccaatccaattccattcataaatatattacatga---tatatgatttaaaagctaa |
26197272 |
T |
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