View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_low_3 (Length: 491)
Name: NF14749_low_3
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 30833994 - 30834450
Alignment:
| Q |
16 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctcagaaatgaacttatccagggcctggaatgctagatgcagtagaggtg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30833994 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctcagaaatgaacttatccagagcctggaatgctagatgcagtagaggtg |
30834093 |
T |
|
| Q |
116 |
agcggtcaaacttagaaagatcgctaagaagaaattcacctggatcattgagtgcttcccttacaggtttgaagttcaaaacctgtggttgtttggcctg |
215 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
30834094 |
ggcggtcaaacttagaaaaatcgctaagaagaaattcgcctggatcattgagtgcttcccttagaggtttgaagttcaaaacctgtggttgtttggactg |
30834193 |
T |
|
| Q |
216 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30834194 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttccg |
30834293 |
T |
|
| Q |
316 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctgaaactgaagtctcacatcatcaacacaagtaactagagcagggt |
415 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |
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| T |
30834294 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctgaaactcaagtctctcatcatcaacacaagaaactagagcagggt |
30834393 |
T |
|
| Q |
416 |
tgtcattgctgatggacgcaattattccagtatgtagttcctctccatcgacatcaa |
472 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30834394 |
tgtcattgctaatggacgcaattattccagtatgtggttcctctccatcgacatcaa |
30834450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 23552606 - 23552150
Alignment:
| Q |
16 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctcagaaatgaacttatccagggcctggaatgctagatgcagtagaggtg |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
23552606 |
atgaatttacgtgcatcttcctctgaaccagcgacggggaagcggccaatctcagaaatgaacttatccaaggcctggaatgctagatgcagtagaggtg |
23552507 |
T |
|
| Q |
116 |
agcggtcaaacttagaaagatcgctaagaagaaattcacctggatcattgagtgcttcccttacaggtttgaagttcaaaacctgtggttgtttggcctg |
215 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23552506 |
ggcggtcaaacttagaaaaatcgctaagaagaaatttgcctggatcattgagtgcttcccttagaggtttgaagttcaaaacctgtggttgtttggcctg |
23552407 |
T |
|
| Q |
216 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttctg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
23552406 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctgtagcatttttaatctttcttggctttcgg |
23552307 |
T |
|
| Q |
316 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctgaaactgaagtctcacatcatcaacacaagtaactagagcagggt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
23552306 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctaaaactcaagtctctcatcatcaacacaagtaactagagcagggt |
23552207 |
T |
|
| Q |
416 |
tgtcattgctgatggacgcaattattccagtatgtagttcctctccatcgacatcaa |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
23552206 |
tgtcattgctgatggacgcaattattccagtatgtggttcctctccattgacatcaa |
23552150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 30814983 - 30815439
Alignment:
| Q |
16 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctcagaaatgaacttatccagggcctggaatgctagatgcagtagaggtg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30814983 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctctgaaatgaacttatccagggcctggaatgctagatgcagtagaggtg |
30815082 |
T |
|
| Q |
116 |
agcggtcaaacttagaaagatcgctaagaagaaattcacctggatcattgagtgcttcccttacaggtttgaagttcaaaacctgtggttgtttggcctg |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
30815083 |
ggcggtcaaacttagaaaaatcgctaagaagaaattcgcctggatcattgagtgcttcccttagaggtttgaagttcaaaacctttggttgtttggcctg |
30815182 |
T |
|
| Q |
216 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttctg |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
30815183 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttccg |
30815282 |
T |
|
| Q |
316 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctgaaactgaagtctcacatcatcaacacaagtaactagagcagggt |
415 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||| |||| |||||||| |
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| T |
30815283 |
tcattcaactctttcataccatgaacttcagagaacacaacaaggtctccgtcctgaaactcaagtctctcatcatcaacacaagatactacagcagggt |
30815382 |
T |
|
| Q |
416 |
tgtcattgctgatggacgcaattattccagtatgtagttcctctccatcgacatcaa |
472 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| || || ||||||| |
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|
| T |
30815383 |
tgtcattgctgatggatgcaattattccagtatgtggttcctccccgtcaacatcaa |
30815439 |
T |
|
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