View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_low_4 (Length: 408)
Name: NF14749_low_4
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 4161147 - 4161529
Alignment:
| Q |
10 |
tccaagaatataactactgcttctcctcacatgtctgccactgctttgctgcaaaaagcatcacaaataggtgtaacgacagtgagtaaaacagaacctt |
109 |
Q |
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| T |
4161147 |
tccaacaatataaccactgcttctcctcacatgtctgccactgctttgctgcaaaaagcatcacaaataggtgtaacgacagtgagtaaaacagaacctt |
4161246 |
T |
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| Q |
110 |
gtagaccccacttaatgcaaactcacgtgccttcaggaatggttatgccttcacgtgaagaaataggaactactggtttttctcattgtttggcttctta |
209 |
Q |
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| T |
4161247 |
gtagaccccacttaatgcaaactcacgtgccttcaggaatggttatgccttcacgtgaagaaataggaaccactggtttttctcattgtttggcttctta |
4161346 |
T |
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| Q |
210 |
tgggaataaagctgcaataacttctgattgctttgaagaatcttcttctcttttgcatgatgtgatgtatggtagtgagagttcacattcacaatttgaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4161347 |
tgggaataaagctgcaataacttctgattgctttgaagaatcttcttctcttttgcatgatgtgatgtatggtagtgagagttcacattcacaatttgaa |
4161446 |
T |
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| Q |
310 |
gctgttactgctgctatgagcatgaggggaatgtttgatacacaaagagataataataactttgaggaacaatattcccattt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4161447 |
gctgttactgctgctatgagcatgaggggaatgtttgatacacaaagagataataataactttgaggaacaatattcccattt |
4161529 |
T |
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