View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14749_low_5 (Length: 405)
Name: NF14749_low_5
Description: NF14749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14749_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 6568112 - 6567741
Alignment:
| Q |
17 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6568112 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
6568013 |
T |
|
| Q |
117 |
acttgatgagatgagtggagggagagacattgaacaagcacttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagcttgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6568012 |
acttgatgagatgagtggagggagagacattgaacaagcacttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagcttgtt |
6567913 |
T |
|
| Q |
217 |
ggtggagctaatgaagttatgagccttcaccttaataggtctctgattccaatgcttagaagagcaggagctatttgggtttgattaattgaactctcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6567912 |
ggtggagctaatgaagttatgagccttcaccttaataggtctctgattccaatgcttagaagagcaggagctatttgggtttgattaattgaactctcat |
6567813 |
T |
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| Q |
317 |
aatactatatatgttataataaatctgttttggttactttacttgtataatgatgagattatatatagtatg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6567812 |
aatactatatatgttataataaatctgttttggttactttacttgtataatgatgagattatatatagtatg |
6567741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 49289816 - 49290053
Alignment:
| Q |
17 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
116 |
Q |
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| T |
49289816 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49289915 |
T |
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| Q |
117 |
acttgatgagatgagtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagctt |
213 |
Q |
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|||||||||||| |||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| |||||||||||||||||| |
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| T |
49289916 |
acttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagctt |
49290015 |
T |
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| Q |
214 |
gttggtggagctaatgaagttatgagccttcaccttaa |
251 |
Q |
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| T |
49290016 |
gttggtggagccaatcaagttatgagtcttcatcttaa |
49290053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 49296767 - 49297004
Alignment:
| Q |
17 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
116 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| |||| |
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| T |
49296767 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49296866 |
T |
|
| Q |
117 |
acttgatgagatgagtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagctt |
213 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| |||||||||||||||||| |
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| T |
49296867 |
acttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagctt |
49296966 |
T |
|
| Q |
214 |
gttggtggagctaatgaagttatgagccttcaccttaa |
251 |
Q |
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||||||||||| ||| |||||||||| ||||| ||||| |
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| T |
49296967 |
gttggtggagccaatcaagttatgagtcttcatcttaa |
49297004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 49303497 - 49303734
Alignment:
| Q |
17 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
116 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| |||| |
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| T |
49303497 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49303596 |
T |
|
| Q |
117 |
acttgatgagatgagtggagggagagacattgaacaagcac---ttttaaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagctt |
213 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||| ||| ||| || || | | || ||||| || |||| |||||||||||||||||| |
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| T |
49303597 |
acttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagctt |
49303696 |
T |
|
| Q |
214 |
gttggtggagctaatgaagttatgagccttcaccttaa |
251 |
Q |
| |
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||||||||||| ||| |||||||||| ||||| ||||| |
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| T |
49303697 |
gttggtggagccaatcaagttatgagtcttcatcttaa |
49303734 |
T |
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