View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1474_high_1 (Length: 581)

Name: NF1474_high_1
Description: NF1474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1474_high_1
NF1474_high_1
[»] chr5 (1 HSPs)
chr5 (18-576)||(20641767-20642325)
[»] chr4 (3 HSPs)
chr4 (80-576)||(52794884-52795380)
chr4 (18-79)||(52795700-52795761)
chr4 (295-387)||(42103715-42103807)
[»] chr6 (3 HSPs)
chr6 (31-557)||(33159498-33160024)
chr6 (443-530)||(31403959-31404046)
chr6 (445-530)||(984074-984159)
[»] chr2 (3 HSPs)
chr2 (420-540)||(29695643-29695763)
chr2 (443-530)||(27691247-27691334)
chr2 (466-540)||(1617756-1617830)
[»] chr7 (3 HSPs)
chr7 (303-557)||(3255746-3256001)
chr7 (443-530)||(13713689-13713776)
chr7 (445-530)||(35249802-35249887)
[»] chr1 (2 HSPs)
chr1 (293-362)||(20777221-20777290)
chr1 (295-387)||(27244151-27244243)
[»] chr8 (2 HSPs)
chr8 (445-530)||(2000864-2000949)
chr8 (466-540)||(6383922-6383996)


Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Original strand, 20641767 - 20642325
Alignment:
Q  18 cttggtcgggagattgatttatttgtgtttcactcggccagaactatcatacagtgtacacactttgtctcaattcatgaatcaaccccgaactgaacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20641767 cttggtcgggagattgatttatttgtgtttcactcggccagaactgtcatacagtgtacacactttgtctcaattcatgaatcaacccctaactgaacat 20641866  T
Q  118 tgggaagctgcattacgagtagtacgatttttaaaagggaatccaggacaagggatattttttggtagtaaaagtgacttaagacttcatggttggtgtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20641867 tgggaagctgcattacgagtagtacgatttttaaaagggaatccaggacaagggatattttttggtagtaaaagtgacttaagacttcatggttggtgtg 20641966  T
Q  218 attcggattgggctagctgccctttaactcgacgatcagtcactggctggatagtgcagctcggtgactctcctatttcttggaaaacaaagaaacaaca 317  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20641967 attcggactgggctagctgccctttaactcgacgataagtcactggctggatagcgcagctcggtgactctcctatttcttggaaaacaaagaaacaaca 20642066  T
Q  318 cactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagtt 417  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20642067 cactgtatctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagtt 20642166  T
Q  418 gttcatgataaaccaatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20642167 gttcatgataaaccaatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttg 20642266  T
Q  518 attgtcattttgtccggaatgaagttctcaaaaataatattcttccggcctatgcttct 576  Q
    | |||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||    
T  20642267 actgtcattttgtccgaaatgaagttctcaaaaataatattcttccagtctatgtttct 20642325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 80 - 576
Target Start/End: Complemental strand, 52795380 - 52794884
Alignment:
Q  80 ctttgtctcaattcatgaatcaaccccgaactgaacattgggaagctgcattacgagtagtacgatttttaaaagggaatccaggacaagggatattttt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52795380 ctttgtctcaattcatgaatcaaccccgaactgaacattgggaagctgcattacgagtagtacgatttttaaaagggaatccaggacaagggatattttt 52795281  T
Q  180 tggtagtaaaagtgacttaagacttcatggttggtgtgattcggattgggctagctgccctttaactcgacgatcagtcactggctggatagtgcagctc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52795280 tggtagtaaaagtgacttaagacttcatggttggtgtgattcggactgggctagctgccctttaactcgacgatcagtcactggctggatagtgcagctc 52795181  T
Q  280 ggtgactctcctatttcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52795180 ggtgactctcctatttcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaacactacatgtgagt 52795081  T
Q  380 taaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgatcattcactgtgacagtcaagcggctatccacattgccaaaaa 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52795080 taaaatggttaaaagggattctttccaacctgggagttgttcatgataaaccaatgatcattcactgtgacagtcaagcggctatccacattgccaaaaa 52794981  T
Q  480 tccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgtccggaatgaagttctcaaaaataatattcttccggcctatgcttct 576  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  52794980 tccggtgttccatgaacgtacgaagcacattgaagttgactgtcattttgtccggaatgaagttctcaaaaataatattcttccggtctatgtttct 52794884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 52795700 - 52795761
Alignment:
Q  18 cttggtcgggagattgatttatttgtgtttcactcggccagaactatcatacagtgtacaca 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52795700 cttggtcgggagattgatttatttgtgtttcactcggccagaactgtcatacagtgtacaca 52795761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 42103807 - 42103715
Alignment:
Q  295 tcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatgg 387  Q
    ||||||||||| |||||||| |  || || ||||| ||||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||    
T  42103807 tcttggaaaactaagaaacagccaaccgtctctcgttcttctgcagaggctgagtatcgctctatggcgatgactacatgtgagttaaaatgg 42103715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 31 - 557
Target Start/End: Original strand, 33159498 - 33160024
Alignment:
Q  31 ttgatttatttgtgtttcactcggccagaactatcatacagtgtacacactttgtctcaattcatgaatcaaccccgaactgaacattgggaagctgcat 130  Q
    ||||||||||| |||||||| |||||  |  | ||||| ||||| |||| ||| ||||||| |||| | |||||  |||| ||||||||||||||||||     
T  33159498 ttgatttatttatgtttcacgcggcctaagttgtcatatagtgtccacattttatctcaatacatgcaacaacctagaacagaacattgggaagctgcac 33159597  T
Q  131 tacgagtagtacgatttttaaaagggaatccaggacaagggatattttttggtagtaaaagtgacttaagacttcatggttggtgtgattcggattgggc 230  Q
    | |||||||| || || |||||||| ||||| |||||||| |||||||| ||||||  | ||||||||   || || ||||||||||| || || |||||    
T  33159598 ttcgagtagttcgcttcttaaaaggtaatccgggacaaggaatatttttgggtagtgcatgtgacttacagctccacggttggtgtgactcagactgggc 33159697  T
Q  231 tagctgccctttaactcgacgatcagtcactggctggatagtgcagctcggtgactctcctatttcttggaaaacaaagaaacaacacactgtttctcgg 330  Q
     || || || || || ||||| || |||||||| ||| |||||  ||| ||| | |||||||||||||||||||||||||||||||| ||||| ||||||    
T  33159698 cagttgtcccttgacgcgacgctctgtcactggttggctagtgttgcttggtaaatctcctatttcttggaaaacaaagaaacaacatactgtctctcgg 33159797  T
Q  331 tcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctttccaacctgggagttgttcatgataaac 430  Q
    || ||||| ||||| |||||| |||| |||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||||| |||||||||||    
T  33159798 tcctctgctgaggcggaatataggtccatggcaactactacatgcgagttaaaatggttaaaggggatcctctccaacctaggagttgctcatgataaac 33159897  T
Q  431 caatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgt 530  Q
    | ||||| ||||||||||| ||||||||  |  | |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  33159898 ccatgattattcactgtgatagtcaagcaaccttacacattgcgaaaaatcctgtgttccatgaacgtaccaagcacattgaagtggattgtcattttgt 33159997  T
Q  531 ccggaatgaagttctcaaaaataatat 557  Q
     ||||| |||||||||||||| |||||    
T  33159998 tcggaacgaagttctcaaaaacaatat 33160024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 530
Target Start/End: Original strand, 31403959 - 31404046
Alignment:
Q  443 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgt 530  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| |||||||||||||||||    
T  31403959 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 31404046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 530
Target Start/End: Complemental strand, 984159 - 984074
Alignment:
Q  445 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgt 530  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| ||||||||||||||||    
T  984159 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 984074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 420 - 540
Target Start/End: Original strand, 29695643 - 29695763
Alignment:
Q  420 tcatgataaaccaatgatcattcactgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgat 519  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||||||| || || ||||||||||| |||    
T  29695643 tcatgacaaaccgatgatcattcactatgacagtcaagcggctatacacatcgccaagaacccggtgttccatgaacgcactaaacacattgaagtcgat 29695742  T
Q  520 tgtcattttgtccggaatgaa 540  Q
    |||||||||||||||||||||    
T  29695743 tgtcattttgtccggaatgaa 29695763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 530
Target Start/End: Original strand, 27691247 - 27691334
Alignment:
Q  443 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgt 530  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| |||||||||||||||||    
T  27691247 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 27691334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 540
Target Start/End: Complemental strand, 1617830 - 1617756
Alignment:
Q  466 cacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgtccggaatgaa 540  Q
    |||||||| || ||||| || |||||||||||||| || ||||||||||| || |||||||| || || ||||||    
T  1617830 cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaagtggactgtcatttcgttcgtaatgaa 1617756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 303 - 557
Target Start/End: Original strand, 3255746 - 3256001
Alignment:
Q  303 aacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatggttaaaagggattctt 402  Q
    ||||||||||||||| |   | ||||| || ||||| || || |||||| ||||||||||||| |||||||| ||||||||||||||| |  |||| ||     
T  3255746 aacaaagaaacaacatatcctctctcgatcctctgctgacgcggaatataggtctatggcaactactacatgagagttaaaatggttacagaggatcctc 3255845  T
Q  403 tccaacctgggagttgttcatgataaaccaatgatcattcactgtgacagtca-agcggctatccacattgccaaaaatccggtgttccatgaacgtacg 501  Q
    |||||||| ||||||| | |||||||||| ||||  ||||||| ||| |||||  || |   | ||||||||||||||||  |||||||||||||||||     
T  3255846 tccaacctaggagttgctaatgataaacccatgactattcactatgatagtcatggcagtcttacacattgccaaaaatcttgtgttccatgaacgtacc 3255945  T
Q  502 aagcacattgaagttgattgtcattttgtccggaatgaagttctcaaaaataatat 557  Q
    || ||||||||||| ||  |||||||||| |||||  ||||||||||||| |||||    
T  3255946 aaacacattgaagtagaccgtcattttgttcggaaaaaagttctcaaaaacaatat 3256001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 530
Target Start/End: Original strand, 13713689 - 13713776
Alignment:
Q  443 actgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgt 530  Q
    |||||||||| ||| | ||  |||| |||||||| ||||||||  ||||||||||||| || || ||||| |||||||||||||||||    
T  13713689 actgtgacagccaatctgccctccatattgccaataatccggtactccatgaacgtacaaaacatattgaggttgattgtcattttgt 13713776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 530
Target Start/End: Complemental strand, 35249887 - 35249802
Alignment:
Q  445 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgt 530  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| ||||||||||||||||    
T  35249887 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 35249802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 20777221 - 20777290
Alignment:
Q  293 tttcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggc 362  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||| ||||| |||||||| ||||||||    
T  20777221 tttcttggaaaactaagaaacaaccaactgtttctcggtcttctgctgaggccgaatatcgctctatggc 20777290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 27244243 - 27244151
Alignment:
Q  295 tcttggaaaacaaagaaacaacacactgtttctcggtcttctgcagaggctgaatatcggtctatggcaaccactacatgtgagttaaaatgg 387  Q
    ||||||||||| |||||||| |  || || ||||| ||||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||    
T  27244243 tcttggaaaactaagaaacagccaaccgtctctcgttcttctgcagaggctgagtatcgctctatggcgatgactacatgtgagttaaaatgg 27244151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 530
Target Start/End: Original strand, 2000864 - 2000949
Alignment:
Q  445 tgtgacagtcaagcggctatccacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgt 530  Q
    ||||| |||||||| || || ||||||||| ||||||| || || || ||||| || || ||||||||| ||||||||||||||||    
T  2000864 tgtgatagtcaagctgccattcacattgccgaaaatccagtttttcacgaacgcaccaaacacattgaaattgattgtcattttgt 2000949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 540
Target Start/End: Original strand, 6383922 - 6383996
Alignment:
Q  466 cacattgccaaaaatccggtgttccatgaacgtacgaagcacattgaagttgattgtcattttgtccggaatgaa 540  Q
    |||||||| || ||||| || |||||||||||||| || ||||||||||| || |||||||| || || ||||||    
T  6383922 cacattgcaaagaatcccgtcttccatgaacgtaccaaacacattgaagtggactgtcatttcgttcgtaatgaa 6383996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University