View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1474_high_6 (Length: 263)
Name: NF1474_high_6
Description: NF1474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1474_high_6 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0038 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 14233474 - 14233723
Alignment:
| Q |
14 |
aaatctcattttatagttgctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttgttattgaagtgaatgagcttatagtttactca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14233474 |
aaatctcattttatagttgctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttgttattgaagtgaatgagcttatagtttactca |
14233573 |
T |
|
| Q |
114 |
aatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttccatatcctggtgcatcaagaagcaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14233574 |
aatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttccatatcctggtgcatcaagaagcaac |
14233673 |
T |
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| Q |
214 |
caattactgcactctcattctgtgaagctgggtatattgcaagaacattt |
263 |
Q |
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| T |
14233674 |
caattactgcactctcattctgtgaagctgagcatattgcaagaacattt |
14233723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 9880718 - 9880895
Alignment:
| Q |
86 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
185 |
Q |
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|||| |||||||| |||||| |||||| | ||||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| || |
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| T |
9880718 |
tgaattgaatgagtttataggttactctgacagtgattggtgtggagatttgactgacagaagaagcacctcaggctatgttttcaagttcaatgattct |
9880817 |
T |
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| Q |
186 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagctgggtatattgcaagaacattt |
263 |
Q |
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||||||||||||| || ||||||||||| | |||||| |||||||| || ||||| || |||||||| | |||||||| |
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| T |
9880818 |
tccatatcctggtacaccaagaagcaactagttactgtactctcatcctatgaagttgagtatattgtaggaacattt |
9880895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 9880629 - 9880694
Alignment:
| Q |
14 |
aaatctcattttatagttgctaagagaatccttagttacatcaagggtaatatgtgaaatttggtttg |
81 |
Q |
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||||||||||| |||| |||||||||||||||||| |||||||||||||||| || ||||||||||| |
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| T |
9880629 |
aaatctcatttgatagctgctaagagaatccttagatacatcaagggtaata--tggaatttggtttg |
9880694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 5722090 - 5721973
Alignment:
| Q |
84 |
attgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatg |
183 |
Q |
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||||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || ||||||| ||| ||||| ||||| |||||||||| |
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| T |
5722090 |
attgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatg |
5721991 |
T |
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| Q |
184 |
cttccatatcctggtgca |
201 |
Q |
| |
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|| | || |||||||||| |
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| T |
5721990 |
ctgcaatctcctggtgca |
5721973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 26904852 - 26904934
Alignment:
| Q |
174 |
ttcaatgatgcttccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagctgggtatattgcaag |
256 |
Q |
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||||| |||||||| ||||| ||||| | |||||||||||| ||| |||||| |||| |||||||| || ||| |||||||| |
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| T |
26904852 |
ttcaacgatgcttctatatcttggtgtaccaagaagcaacctgttagtgcactttcatcctgtgaagttgagtaaattgcaag |
26904934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 44536634 - 44536489
Alignment:
| Q |
86 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
185 |
Q |
| |
|
||||||||||||||| |||| || ||| | ||||| |||||||||||| | ||||| || ||||||| |||| ||||| ||||| |||||||||||| |
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| T |
44536634 |
tgaagtgaatgagctcataggatattcagacagtgattggtgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgct |
44536535 |
T |
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| Q |
186 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
231 |
Q |
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| || |||||||||| ||||||||||||||| ||||| ||||||| |
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| T |
44536534 |
gcaatctcctggtgcaccaagaagcaaccaatcactgcgctctcat |
44536489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 296575 - 296681
Alignment:
| Q |
157 |
caggctatgttttcaagttcaatgatgcttccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagctgggtatattgcaag |
256 |
Q |
| |
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|||| ||||| ||||| |||||||||||| | || |||||||||| ||||||||||||||| || |||||||||| || |||||||| ||| |||||| | |
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| T |
296575 |
caggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcaccgcactctcatcctatgaagctgagtacattgcagg |
296674 |
T |
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| Q |
257 |
aacattt |
263 |
Q |
| |
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||||||| |
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| T |
296675 |
aacattt |
296681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 35898090 - 35898243
Alignment:
| Q |
88 |
aagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttc |
187 |
Q |
| |
|
|||||||||| || |||| ||||| ||||||| ||||||||||| | | ||| || |||| || |||| ||||| ||||| |||||||||||| | |
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| T |
35898090 |
aagtgaatgaactcataggatactctgatagtgattggtgtggagacctaactgataggagaaacacttcaggttatgtgttcaaattcaatgatgctgc |
35898189 |
T |
|
| Q |
188 |
catatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagc |
241 |
Q |
| |
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|| || ||||||| |||||||||||| | ||||||||||||| |||||||| |
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| T |
35898190 |
aatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaagc |
35898243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 48753 - 48908
Alignment:
| Q |
86 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
185 |
Q |
| |
|
||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || |||| || || | ||||| ||||| |||||||||||| |
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| T |
48753 |
tgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaaacacttcaagttatgtgttcaaattcaatgatgct |
48852 |
T |
|
| Q |
186 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagc |
241 |
Q |
| |
|
| || || ||||||| ||||||||||||| | |||||||| |||| ||||||||| |
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|
| T |
48853 |
gcaatttcatggtgcaccaagaagcaaccagtcactgcactttcatcctgtgaagc |
48908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 241
Target Start/End: Original strand, 28248591 - 28248746
Alignment:
| Q |
86 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
185 |
Q |
| |
|
||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || |||| || || | ||||| ||||| |||||||||||| |
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| T |
28248591 |
tgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaaacacttcaagttatgtgttcaaattcaatgatgct |
28248690 |
T |
|
| Q |
186 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagc |
241 |
Q |
| |
|
| || || ||||||| ||||||||||||| | |||||||| |||| ||||||||| |
|
|
| T |
28248691 |
gcaatttcatggtgcaccaagaagcaaccagtcactgcactttcatcctgtgaagc |
28248746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 34982781 - 34982956
Alignment:
| Q |
86 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
185 |
Q |
| |
|
|||||| |||||||| |||| ||||||| ||||||| |||||||||||| | | || |||| |||| |||||||||| ||||| ||||||||| || |
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|
| T |
34982781 |
tgaagttaatgagctcataggttactcagatagtgattggtgtggagatctaaccgatagaaagagcacatcaggctatgtgttcaaattcaatgatact |
34982880 |
T |
|
| Q |
186 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagctgggtatattgcaagaacattt |
263 |
Q |
| |
|
| || || ||||| | ||||||||||| | | |||||| ||||| |||||||| || |||||||||| |||||||| |
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|
| T |
34982881 |
gcaatttcatggtgtaccaagaagcaactagtcactgca--ctcatcctgtgaagttgagtatattgcatgaacattt |
34982956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 18645860 - 18645743
Alignment:
| Q |
84 |
attgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatg |
183 |
Q |
| |
|
||||||||||||||||| |||| ||| ||| | ||||| |||||||||||| | ||||| || ||||||| ||| ||||| ||||| |||||||||| |
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|
| T |
18645860 |
attgaagtgaatgagctcataggttattcagacagtgattggtgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatg |
18645761 |
T |
|
| Q |
184 |
cttccatatcctggtgca |
201 |
Q |
| |
|
|| | || |||||||||| |
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| T |
18645760 |
ctgcaatctcctggtgca |
18645743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 3461218 - 3461370
Alignment:
| Q |
88 |
aagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgcttc |
187 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||| ||||||||||| ||| ||| || ||||||| |||| ||||| ||||| |||||||||||| | |
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|
| T |
3461218 |
aagtgaatgagctcatatgatactctgatagtgattggtgtggagacctgactgataggagaagcacttcaggttatgtgttcaaattcaatgatgctgc |
3461317 |
T |
|
| Q |
188 |
catatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaag |
240 |
Q |
| |
|
|| || ||||||| |||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
3461318 |
aatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtgaag |
3461370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 301769 - 301914
Alignment:
| Q |
86 |
tgaagtgaatgagcttatagtttactcaaatagtgactggtgtggagatttgattgacagaagaagcatcccaggctatgttttcaagttcaatgatgct |
185 |
Q |
| |
|
|||||||||||| || |||| ||| ||| | | ||| |||||||||||| | ||||| || ||||||| ||| ||||| ||||| |||||||||||| |
|
|
| T |
301769 |
tgaagtgaatgacctcataggttattcagacaatgattggtgtggagatctaattgataggagaagcacttcagattatgtgttcaaattcaatgatgct |
301868 |
T |
|
| Q |
186 |
tccatatcctggtgcatcaagaagcaaccaattactgcactctcat |
231 |
Q |
| |
|
| || || ||||||| ||||||||||||| | | ||||||||||| |
|
|
| T |
301869 |
gcaatctcttggtgcaccaagaagcaaccagtcaatgcactctcat |
301914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 37787255 - 37787149
Alignment:
| Q |
157 |
caggctatgttttcaagttcaatgatgcttccatatcctggtgcatcaagaagcaaccaattactgcactctcattctgtgaagctgggtatattgcaag |
256 |
Q |
| |
|
|||| ||||| ||||| |||||||||||| | || |||| ||||| ||||||||||||||| || | |||||||| | |||||| | ||| |||||| | |
|
|
| T |
37787255 |
caggttatgtgttcaaattcaatgatgctgcaatctcctagtgcaccaagaagcaaccaatcacaggactctcatcttatgaagcagagtacattgcagg |
37787156 |
T |
|
| Q |
257 |
aacattt |
263 |
Q |
| |
|
||||||| |
|
|
| T |
37787155 |
aacattt |
37787149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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